Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2776 ATGAATGAGAATAAGATTAATTATTTAGGAATGATTCAACAAAACCATAGACTAAATGGTGGTTTTAATTCTGAGCTAGGAAATTGTTCAAGTCAATATTTTGATATGAGAAATGCTTCAAATATTGGTCAACCATTTTCAATGGAGCAATCATCATCTACCACAATTATAAGCCGTTTTGAGTCACCAAATTCAGCTTTTTATGCAACAGAAATTTGCATGGGATTTCCAACTTATGATTTGGAATTTCCTTTGTATCAATGTCCAAGGGAAAATATTTTTCTTCATTCTTCAACAAACCAAACTAGTAATAGCTTTGATTTGTCAAACTTAAACCCTTTGCAAACACTGGTTAGATCATCTCAATTGAATAGTGATGATCAATGTTGTAGATCTCCTGAGAAATCCAATGGAAATTTTCAACATAATTTCTTCATTGATGACCCGACGTCGATTAGTATGAGTCCATTAATTCATTCTAATGGAAATCAGGATCATAAATTACATTTCTCTCATCAACAAGAGAAAGTTTCTCGAACAATGTCAACTGGAAATGTGTCAACAATTTCTGGAAACCCTTGCGGATCATCATCGGTCTCGAGTAAAACAAGAATAAGATGGAATCAAGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGTCTTGGAGGCGCCGAGAAGGCGACACCGAAAGCTATTTTAAGGTTGATGGAATTAGATGGGTTGACGATCTTTCATGTTAAAAGTCATCTGCAGAAATATAGAATTGCGAAATACATGCCAGAACCAACTCAGGGGAAATATGAGAAAAGAACTCATGTAGAGAATGCGCATCTTGATGTCAAATCTGGCTTGCAAATAAGAGAGGCACTTCAACTTCAACTCGATGTTCAGAGGCGTCTTCACGAACAACTTGAGATTCAGAGAAAATTACAGTTGCGAATCGAGGAACAAGGAAAGCAGCTGAAGATGATGTTTGACCAACAACAAAAGACAAATATCGGCCAATTGAATACTCAGAATTTGGATAATACATCAAATATTGATACACAAATTAGTCTTAAAGATATCGAGGTTTCGAGTTTTGAAGCTTCGGGAAATTCCTTATTCCCTTTAAAGATAAGTTAG 1128 0.3528 MNENKINYLGMIQQNHRLNGGFNSELGNCSSQYFDMRNASNIGQPFSMEQSSSTTIISRFESPNSAFYATEICMGFPTYDLEFPLYQCPRENIFLHSSTNQTSNSFDLSNLNPLQTLVRSSQLNSDDQCCRSPEKSNGNFQHNFFIDDPTSISMSPLIHSNGNQDHKLHFSHQQEKVSRTMSTGNVSTISGNPCGSSSVSSKTRIRWNQDLHEKFVECVNRLGGAEKATPKAILRLMELDGLTIFHVKSHLQKYRIAKYMPEPTQGKYEKRTHVENAHLDVKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTNIGQLNTQNLDNTSNIDTQISLKDIEVSSFEASGNSLFPLKIS* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2776 375 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 186 375 - -
Psa6g2776 375 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 49 146 - -
Psa6g2776 375 SUPERFAMILY Homeodomain-like 200 256 IPR009057 -
Psa6g2776 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 259 IPR017930 -
Psa6g2776 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 49 146 IPR044848 GO:0003700
Psa6g2776 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 186 375 IPR044848 GO:0003700
Psa6g2776 375 Gene3D - 201 260 - -
Psa6g2776 375 Pfam MYB-CC type transfactor, LHEQLE motif 285 332 IPR025756 -
Psa6g2776 375 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 257 IPR006447 GO:0003677
Psa6g2776 375 Pfam Myb-like DNA-binding domain 206 255 IPR001005 -
Psa6g2776 375 Coils Coil 288 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2776 Psa-Chr6 223708506 223711307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2776 186 329 G2-like Transcription Factor Family AT4G28610 59.184 6.13e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa6g2776 Myb_DNA-binding 2.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2776 - - gmx:102668541 434.106