Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2769 ATGGATAACCGCAAACGAGGGAGGTTCGATGCCGGCGTTAACGGCTCCGCTAAGAAGACTAAACAAGAAATGGACTCAATATCAAGTGGTGTAGGAAGCAAAACGAAGCCTTGTACCAAGTTTTTCAGCATTGCTGGCTGCCCATTTGGTGAAGGCTGTCACTTCTTGCATTTTGTTCCTGGTGGTTATAATGCCGTTGCCCAAATGATGAATCTGAAACCTGCTGCACCTCCTAGAAATGTTGCCGCCCCACCACCAGTCTCTAACAATGGATCTGCACCGCAAGCTGTTAAAACCCGCATATGTAACAAGTTTAATTCTGCCGAGGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAACCATTTGTTCCATCAATTGATGATCACCGTCCTATGGCACCTACAACAGTTAATCGTATGGTTGGTCGAACTGAGGCTCCCTCTGGTCTGGGCGCTACTAGCTTTGGTGCCAATTCCACTGCCAAGATCAGTGTAGAAGCTTCCTTGGCTGGAGCCATCATTGGAAAGGGTGGTGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGTCAAATTTTCAATTCGTGACCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAACATTTGATCAAATTGCACAGGCAAGTAACATGGTAAAAGATTTACTTTTGACTCTATCAGTCTCCGCCCCACCGAAATCCGCCCCAGGTGGTCCAGGTGCCCCAGCCCCACCTGGAAGAAACATCAAGACCAAGCTTTGTGAGAATTTTGCTAAAGGGTCTTGCACATTCGGGGAAAGATGTCATTTTGCCCACGGTGCTGCCGAATTGCGAAAGCTAGGAATCTAA 882 0.4728 MDNRKRGRFDAGVNGSAKKTKQEMDSISSGVGSKTKPCTKFFSIAGCPFGEGCHFLHFVPGGYNAVAQMMNLKPAAPPRNVAAPPPVSNNGSAPQAVKTRICNKFNSAEGCKFGDKCHFAHGEWELGKPFVPSIDDHRPMAPTTVNRMVGRTEAPSGLGATSFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGVKFSIRDHESDPNLRNIELEGTFDQIAQASNMVKDLLLTLSVSAPPKSAPGGPGAPAPPGRNIKTKLCENFAKGSCTFGERCHFAHGAAELRKLGI* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2769 293 Pfam KH domain 169 231 IPR004088 GO:0003723
Psa6g2769 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 162 236 IPR036612 GO:0003723
Psa6g2769 293 SUPERFAMILY CCCH zinc finger 95 127 IPR036855 GO:0046872
Psa6g2769 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 123 IPR000571 GO:0046872
Psa6g2769 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 284 IPR000571 GO:0046872
Psa6g2769 293 CDD KH-I 168 231 - -
Psa6g2769 293 Pfam RNA-binding, Nab2-type zinc finger 37 57 - -
Psa6g2769 293 MobiDBLite consensus disorder prediction 1 28 - -
Psa6g2769 293 Gene3D K Homology domain, type 1 162 258 IPR036612 GO:0003723
Psa6g2769 293 Gene3D - 259 290 - -
Psa6g2769 293 Gene3D - 91 128 - -
Psa6g2769 293 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 10 292 - -
Psa6g2769 293 SUPERFAMILY CCCH zinc finger 33 57 IPR036855 GO:0046872
Psa6g2769 293 SMART kh_6 165 235 IPR004087 GO:0003676
Psa6g2769 293 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Psa6g2769 293 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 10 292 - -
Psa6g2769 293 ProSiteProfiles Zinc finger C3H1-type profile. 96 124 IPR000571 GO:0046872
Psa6g2769 293 ProSiteProfiles Zinc finger C3H1-type profile. 32 60 IPR000571 GO:0046872
Psa6g2769 293 SUPERFAMILY CCCH zinc finger 259 289 IPR036855 GO:0046872
Psa6g2769 293 SMART c3hfinal6 96 123 IPR000571 GO:0046872
Psa6g2769 293 SMART c3hfinal6 32 59 IPR000571 GO:0046872
Psa6g2769 293 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Psa6g2769 293 ProSiteProfiles Type-1 KH domain profile. 166 230 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa6g2769 KH_1 2.3e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2769 - - gmx:100817463 454.907