Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2762 ATGCCTCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGATCACATGGCAAGTTCTCATGTTGCTGTTCTGCAATGGTTGCATCAATATACGTTCAGCAATATTATCAAGCCACTGCAAGGGAACTAATACGGATCAATGGAAAACCCAAAGCTCCAGTCATGAATTTTGCAGCTGAGACGTCAGTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGACAAAATTTTTCAAAAACTACTTAACACTTGTAGATACAGATGCTTCATTGTTCTTTCACTTCCAATGCGGGCAATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTTGCATCTTTGTTGGTATATTCTACTTCCTCATGGATATGTATCTCCAGGCCTTGTGGGACTTTGAGCCTCCCGCTATTGTGGAAGATAACCGACCGCCATCTTCGTGGCCTTCCAAGGAAAGATTGATTCTTCAAGGCTTGGAGATAAGATATCGTCCTAATGCTCCATTGGTTCTTAAGGGAATCACTTGTAAATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGATTTGAGAATGAAGCTAAGCATAATCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTTGGCCTGTACTCAGACGAAGATATCTGGAAGGCTATAGAGAAATGTCAGCTTAAGGAAACAATCAGCAAACTACCAACTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGGCAATTGTTTTGTCTTGGAAGAGTTCTACTAAAGAGAAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCTACAGATGCCATTTTACAAAGAGTAATCAGACAGGAATTTGAAGAATGTACGCTTATAACAGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTTATGGTTTTATCTTATGGGAAACTGATGGAATACGATGAACCTTCAAAGCTAATGGCTACAAACTCTTCATTCTCTAAGCTGGTGGCTGAATATTGGTCCAGTTGCAGGAAGAATTCACTCCCAAATATTAGCAGACAACAACAATGA 1155 0.4078 MPPMLFFDSTPVGRILTRSHGKFSCCCSAMVASIYVQQYYQATARELIRINGKPKAPVMNFAAETSVGVVTVRAFNMVDKIFQKLLNTCRYRCFIVLSLPMRAMEWVVLRIEALQNLTVITCIFVGIFYFLMDMYLQALWDFEPPAIVEDNRPPSSWPSKERLILQGLEIRYRPNAPLVLKGITCKFKEGSRVGVVGRTGSGKRFENEAKHNPQEPTLFKGSIRTNLDPLGLYSDEDIWKAIEKCQLKETISKLPTLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFEECTLITVAHRVPTVIDSDMVMVLSYGKLMEYDEPSKLMATNSSFSKLVAEYWSSCRKNSLPNISRQQQ* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2762 384 Gene3D - 205 366 IPR027417 -
Psa6g2762 384 Gene3D - 146 204 IPR027417 -
Psa6g2762 384 Gene3D ABC transporter type 1, transmembrane domain 20 140 IPR036640 GO:0005524|GO:0016021
Psa6g2762 384 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 143 203 - -
Psa6g2762 384 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 213 377 - -
Psa6g2762 384 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 29 125 - -
Psa6g2762 384 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 143 203 - -
Psa6g2762 384 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 213 377 - -
Psa6g2762 384 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 29 125 - -
Psa6g2762 384 SUPERFAMILY ABC transporter transmembrane region 3 131 IPR036640 GO:0005524|GO:0016021
Psa6g2762 384 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 165 366 IPR003439 GO:0005524
Psa6g2762 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 365 IPR027417 -
Psa6g2762 384 CDD ABCC_MRP_domain2 162 350 - -
Psa6g2762 384 Pfam ABC transporter 204 297 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2762 Psa-Chr6 220235982 220238675 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2762 214 364 Calmodulin-binding Proteins AT2G36910 32.468 2.40e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2762 - - gmx:100784827 495.352