Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2760 ATGGCTTCCTTTTGCAATTCGTTTGGTGAAATTTCATGGGTTTGTCTCAACAATTTTGATTTCGCTTCTTTATGCTTTCAAAGGACCTTAATAGACACAATCAACATACTCTTTCTCTCTCTCTACTTCACATCTTTGCTTATCACTTTCATCACAAAAACTTCATCAAATCAAAGCCATACAAAATGCTGGATTTTTCTTATTGCCTCAATCTGTTGTGCTATTGTTAGCATTTCAGTTTTCACTGTTGGATTGTGGAATATCAAAGATAAATCTGAGCAACTGAAATGGTTAACTTGCGTTATCAGAGGAATCGTTTGGATTTCTTTTTCTGTTTCTTTGATTGTTCAGCTAGTCAGATGGATAAGAATATTAAACTCTATATGGTGGTTATTTTCTTGTGTGTTGGTTTCATCTCTCAACATTGAAATTCTATTCCGAAATCATGCAATTGGAACTTTTGATATTGTACAGTGGCTTGTACATTTCCTTCTTCTGTATTGTGCATTTAAAAATCTTGGTTATTTGGGAACTCATAGTGTCCAACAAGGTTTATCTGAGCCATTATTAGCTCAAAAATTTGAAACTAAACAAACAGGACTTGGTCATGCTACTTTTATCAGCAAGCTGGTTTTCTCTTGGATGAATTCTTTACTCATTTTAGGTTACTCAAAGCCATTAGATCTTGAAGAAATCCCTTCCCTTCTTTCGGAAGATGAAGCCAACATGGCCTATCAAAAATTTGTCCATGCTTGGGAATCACTTGTTAGAGAGAGAGCAAAGAATAATACAAAGAGTTTGGTTCTTTGGTCTATAGTTAGAACTTACTTAGGAGAAAACATATTAATAGCATTTTATGGATTAATCAGAACTGTTTCTGTTGCTGTTTCACCTCTAATACTCTATGCTTTTGTTAAATACTCAAATAGAACTGAGCCAGATCTTAGACAAGGTCTTTCCATAGTTGGTTTTTTGATTGTCACCAAAGTGTTTGAGTCTTTGTTTCAAAGACATTGGTTTTTTAACTCAAGAAGATCAGGGTTGAAAATGAGATCAGCTCTGATGGTAGCAGTTTATCAAAAGCAGCTAAAGCTTTCTAGCTCGGCAAGGTCACGACATGCGGCTGGAGAAATTGTGAACTACATTGCTGTTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATACAACATGGAATTCTGTATTGCTACTTGTTCTCTCCATTGGTATCCTTTTTGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTGGTCTCCCTTCTTATATGTGGATTTCTTAATGTGCCATTTGCAAGGATCCTACAAAATTGCCACTCACAGTTTATGATTGCACAGGACGAGCGTCTTCGATCGACTTCAGAGATTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAATTCAAAAACTTAGTCCAGTCACTACGAGATAAAGAGTTCGTATGGTTGTCTAAGGCACAGATCTTGAAAACTTCTACTTCATTTCTTTATTGGATGTCTCCTAGTGTTATTTCTGCTGTTGTTTTTCTTGGATGTGCTGTTACCAAGAGTGCACCATTGAATGCTGGAACTATTTTCACCGTTCTTGCAACATTGAGGAACATGGGAGAGCCTGTTAGATTGGCCCCAGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCCTTCGATCGTCTTAATAACTTTTTGCTTGATGAAGAACTAAACAAGGATGTTAGTGAAAGAAAATTCAAGGAATGTCCGGTTAACGCTGTGGAAGTTCAAGACGGCAACTTTATTTGGGATCATGAATCTGTGTCTCCAACTTTAGCAGATGTGAATTTAGAAATCAAATGGAGACATAAAATTGCAGTTTATGTGAATTTAGAAATCAAATGGAGACATAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGGAAATCATCACTTTTGTATGCAATACTTGGAGAGATTCCTAAGATGTCAGGAACGGTTGATGTAGGTGGCACTTTTGCCTATGTTTCCCAATCTTCATGGATTCAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAAAGCAATTAAAGCTTGTGCTTTAGATAAGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGGATAAACATGAGTGGAGGACAAAAACAAAGGATTCAACTAGCTAGAGCAGTCTATAATGATGCTGATATCTATCTCCTAGATGATCCATTCAGTGCAGTTGATGCACATACAGCTGCAATACTATTCAATGAATGTGTCATGACTGCTTTAAGAGAGAAAACTGTTATTCTAGTTACTCATCAAGTGGAATTTCTCTCAGAAGTTGATACAATCTTGGTAATGGAAGGAGGAAAAATTATTCAATCAGGTAGTTATGAGAATCTCCTAATAGCAGGAACAGCCTTTGAACTACTTGTGAGTGCTCATAAAGACACAATTACTGAGATGAATCAAGATATTGAAAATAAAAGAGGTTCTGAAATCGAAGTTTTGTCTAATCCTCAAAATTCTCATGGTTTTTATCTCACTAAAAATCCAAGTGAGGGAGAGATTTCTAGTATCAAGGGACCAATTGGTGCACAACTTACACAAGAGGAAGAAAAAGTGATTGGTAATGTTGGATGGAAGCCATTCTGGGATTATATAAATTATTCCAAAGGGACATTCATGTTGTCTTTCATCATGTTAGCACATTTTGCTTTCATGGCTTTTCAAACGGCATCAACCTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAGTTACTAATGCCACCTTGATTGAAATTTATGCATTAATTTCTTTTGCTAGTGCTGCTTTTGTATATGTAAGGTCTTACTTGACTGCACTTCTTGGATTAAAAGCTTCTACTGCTTTCTTCTCAAGCTTCACTACAGCTATCTTCAATGCTCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCAGATTTGAGTATATTGGACTTTGATATACCGTATTCCATCACCTTTGTATTATGTGTAGCACTCGAAATTTTGGTGGTAATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATACGTTCAGCAATATTATCAAGCCACTGCAAGGGAACTAATACGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCAGCTGAGACGTCAGTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGACAAATTTTTCAAAAACTACTTAACACTTGTAGATACAGATGCTTCATTGTTCTTTCACTCCAATGCGGCAATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTGCATCTTTGTTGGTTATTCTACTTCCTCATGGATATGTATCTCCAGGCCTTGTGGGACTGTCTCTTTCTTATGCTTTTACCTTGACAGGAGCCCAAATATTTTGGAGTAGATGGTTTTCTAACTTATCAAACTATATTATATCTGTTGAAAGAATCAAACAATTCATTCATATACCAGTTGAGCCTCCCGCTATTGTGGAAGATAACCGACCGCCATCTTCGTGGCCTTCCAAGGGAAAGATTGATCTTCAAGGCTTGGAGATAAGATATCGTCCTAATGCTCCATTGGTTCTTAAGGGAATCACTTGTAAATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTGATTAGTGCTTTGTTTCGCTTAGTTGAGCCATCAAGAGGTGATATTCTCATAGATGGGGTAAACATTTGCTCAATTGGGTTGAAGGATTTGAGAATGAAGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTTGGCCTGTACTCAGACGAAGATATCTGGAAGGCTATAGAGAAATGTCAGCTTAAGGAAACAATCAGCAAACTACCAACTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGGCAATTGTTTTGTCTTGGAAGAGTTCTACTAAAGAGAAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCTACAGATGCCATTTTACAAAGAGTAATCAGACAGGAATTTGAAGAATATGCCATTTTACAAAGAGTAATCAGACAGGAATTTGAAGAATGTACGGTTATAACAGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTTATGGTTTTATCTTATGGGAAACTGATGGAATACGATGAACCTTCAAAGCTAATGGATACAAACTCTTCATTCTCTAAGCTGGTGGCTGAATATTGGTCCAGTTGCAGGAAGAATTCATTTCCAAATATTAGCATACAGCAACAATGA 4491 0.3725 MASFCNSFGEISWVCLNNFDFASLCFQRTLIDTINILFLSLYFTSLLITFITKTSSNQSHTKCWIFLIASICCAIVSISVFTVGLWNIKDKSEQLKWLTCVIRGIVWISFSVSLIVQLVRWIRILNSIWWLFSCVLVSSLNIEILFRNHAIGTFDIVQWLVHFLLLYCAFKNLGYLGTHSVQQGLSEPLLAQKFETKQTGLGHATFISKLVFSWMNSLLILGYSKPLDLEEIPSLLSEDEANMAYQKFVHAWESLVRERAKNNTKSLVLWSIVRTYLGENILIAFYGLIRTVSVAVSPLILYAFVKYSNRTEPDLRQGLSIVGFLIVTKVFESLFQRHWFFNSRRSGLKMRSALMVAVYQKQLKLSSSARSRHAAGEIVNYIAVDAYRMGEFPWWFHTTWNSVLLLVLSIGILFGVVGIGALPGLVSLLICGFLNVPFARILQNCHSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVQSLRDKEFVWLSKAQILKTSTSFLYWMSPSVISAVVFLGCAVTKSAPLNAGTIFTVLATLRNMGEPVRLAPEALSIMIQVKVSFDRLNNFLLDEELNKDVSERKFKECPVNAVEVQDGNFIWDHESVSPTLADVNLEIKWRHKIAVYVNLEIKWRHKIAVCGPVGAGKSSLLYAILGEIPKMSGTVDVGGTFAYVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNECVMTALREKTVILVTHQVEFLSEVDTILVMEGGKIIQSGSYENLLIAGTAFELLVSAHKDTITEMNQDIENKRGSEIEVLSNPQNSHGFYLTKNPSEGEISSIKGPIGAQLTQEEEKVIGNVGWKPFWDYINYSKGTFMLSFIMLAHFAFMAFQTASTFWLAIAIEIPKVTNATLIEIYALISFASAAFVYVRSYLTALLGLKASTAFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVLCVALEILVVICIMVSVTWQVLIVAVPAMVASIYVQQYYQATARELIRINGTTKAPVMNFAAETSVGVVTVRAFNMVDKFFKNYLTLVDTDASLFFHSNAAMEWVVLRIEALQNLTVITASLLVILLPHGYVSPGLVGLSLSYAFTLTGAQIFWSRWFSNLSNYIISVERIKQFIHIPVEPPAIVEDNRPPSSWPSKGKIDLQGLEIRYRPNAPLVLKGITCKFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGVNICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDEDIWKAIEKCQLKETISKLPTLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFEEYAILQRVIRQEFEECTVITVAHRVPTVIDSDMVMVLSYGKLMEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSFPNISIQQQ* 1497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2760 1496 CDD ABCC_MRP_domain2 1228 1462 - -
Psa6g2760 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 281 562 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2760 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 596 833 IPR003439 GO:0005524
Psa6g2760 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1232 1478 IPR003439 GO:0005524
Psa6g2760 1496 SUPERFAMILY ABC transporter transmembrane region 269 576 IPR036640 GO:0005524|GO:0016021
Psa6g2760 1496 SMART AAA_5 1256 1455 IPR003593 -
Psa6g2760 1496 SMART AAA_5 637 810 IPR003593 -
Psa6g2760 1496 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 65 1414 - -
Psa6g2760 1496 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 1417 1489 - -
Psa6g2760 1496 SUPERFAMILY ABC transporter transmembrane region 901 1212 IPR036640 GO:0005524|GO:0016021
Psa6g2760 1496 Gene3D - 1213 1478 IPR027417 -
Psa6g2760 1496 Pfam ABC transporter 1247 1395 IPR003439 GO:0005524
Psa6g2760 1496 Pfam ABC transporter 631 762 IPR003439 GO:0005524
Psa6g2760 1496 CDD ABC_6TM_ABCC_D1 282 570 IPR044746 GO:0140359
Psa6g2760 1496 CDD ABC_6TM_ABCC_D2 912 1205 IPR044726 GO:0140359
Psa6g2760 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1180 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2760 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 830 IPR027417 -
Psa6g2760 1496 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 65 1414 - -
Psa6g2760 1496 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1417 1489 - -
Psa6g2760 1496 ProSitePatterns ABC transporters family signature. 735 749 IPR017871 GO:0005524
Psa6g2760 1496 Pfam ABC transporter transmembrane region 288 542 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2760 1496 Pfam ABC transporter transmembrane region 916 1180 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2760 1496 CDD ABCC_MRP_domain1 596 810 - -
Psa6g2760 1496 Gene3D - 574 855 IPR027417 -
Psa6g2760 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1220 1477 IPR027417 -
Psa6g2760 1496 Gene3D ABC transporter type 1, transmembrane domain 883 1210 IPR036640 GO:0005524|GO:0016021
Psa6g2760 1496 Gene3D ABC transporter type 1, transmembrane domain 256 573 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2760 Psa-Chr6 220185603 220193913 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2760 614 824 Calmodulin-binding Proteins AT2G36910 27.313 5.39e-18 89.0