Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2726 ATGAATCAAGAAAACGATGTTTCACCATTTTTTCTATGCCCTATTTCACTACAACCCATGAAGGATCCGGTTACTGTCTCTACTGGCATAACCTACGACAGACAATCCATCGAAAAATGGCTCTTTTCATCCCAAAACAATACATGTCCTGTCACTAAACAACAACTCTTACATGATCATCAAAATCTCATTATTCTCACACCAAACCATACTCTTCGTAGACTCATTCAAGCATGGTGCACCATTAACTCCTCTTATGGCGTCGAAAGAATTCCAACTCCAAAACCTCCAACAAAAAAAACCCTTATAGAAAAACATCTCAAAGAAGCTTCGGATTCTTCAGATTCACCTCACTTGCTTATTCAATCCCTCAGAAAGCTCAAAACAATCGCTTCTGAGAGCGAAACAAATCGACGGTGTATTGAATCTGCCGGTGCTGTAGGGTTCTTAGCATCAATAGTAACGAAAAACAACACAAGCTGTTCATCTTCATGTTCCACAACAGAATTAACAGAAACTAGCATTCTTGATGACGATGATGATATGGAAGGTTTTGCTTTTGACTTCAATATTGGTGCAGATGATGAAGCTATAAACATCCTTTACAATCTTCATTTAACAGAACAAGGTTTGAAAACTCTCTTAAACTTCCAAAATGGAGAATTTTTAGACTCTTTAATGAGATTATTGCAAAAGGGTAATTACGATTCAAGAACATACGCAGTTTTTCTGTTGAAATCTATGTCAAAGATTGCTGATCCATCAAAACTAGCAAGTCTAAAAACCGAGTTTTTCGTTGAACTAGTTCAGCTTCTTAAAGATCAGATATCAGAAAAAGCGTCAAAGGCAACACTACAAACGTTAATTCAACTAGTTGAGTTTGGGAGAAATAGAATAAGAGCAGTGGAATCAGGATGTGTTCAAGTTTTGATAGAACTTCTTCTTGATTCCAAAGAAAGAAAACCATGTGAGATGATTTTGGTGCTCTTGGAGATGTTATGTCAATGTGCTGATGGAAGATATGAACTTTTAAGTCATGCATGTGGTTTAGCTATTGTTTCAAAGAAGATTCTGAGGGTTTCAACAATGGCTAATGATAGAGCAGTGAGAATTCTTCTATCTGTTTCAAGATTCTCTGCAACACATATAGTGGTTCAAGAAATGCTGCAAATAGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCTAAGGAGAAAGCAAGAGAGGTTCTTAAACTTCATGCAAAGTCTTGGAGTAATTCTCGTTGTGTGCCCACTAATTTGCTTGCTTCTTACCCATCAGCAAGTGCTTGA 1332 0.3701 MNQENDVSPFFLCPISLQPMKDPVTVSTGITYDRQSIEKWLFSSQNNTCPVTKQQLLHDHQNLIILTPNHTLRRLIQAWCTINSSYGVERIPTPKPPTKKTLIEKHLKEASDSSDSPHLLIQSLRKLKTIASESETNRRCIESAGAVGFLASIVTKNNTSCSSSCSTTELTETSILDDDDDMEGFAFDFNIGADDEAINILYNLHLTEQGLKTLLNFQNGEFLDSLMRLLQKGNYDSRTYAVFLLKSMSKIADPSKLASLKTEFFVELVQLLKDQISEKASKATLQTLIQLVEFGRNRIRAVESGCVQVLIELLLDSKERKPCEMILVLLEMLCQCADGRYELLSHACGLAIVSKKILRVSTMANDRAVRILLSVSRFSATHIVVQEMLQIGVVAKLCLVLQVDSGNKAKEKAREVLKLHAKSWSNSRCVPTNLLASYPSASA* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2726 443 PANTHER WDSAM1 PROTEIN 4 440 IPR045185 GO:0061630
Psa6g2726 443 CDD RING-Ubox_PUB 11 54 IPR045210 -
Psa6g2726 443 Gene3D - 99 431 IPR011989 -
Psa6g2726 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Psa6g2726 443 SUPERFAMILY ARM repeat 107 424 IPR016024 -
Psa6g2726 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 4 440 - -
Psa6g2726 443 SUPERFAMILY RING/U-box 6 88 - -
Psa6g2726 443 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Psa6g2726 443 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Psa6g2726 443 Pfam U-box domain 8 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2726 Psa-Chr6 213075811 213077645 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2726 1 440 U-box Gene Family AT3G52450 52.360 2.90e-154 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2726 - - adu:107471540 547.354