Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2723 ATGGATGATATTGAAGTTCCACAGTTTTTCATTTGCCCAATCTCTCTCCAAATTATGAAAGATCCAGTTACTGCTATAACAGGCATAACCTACGATCGAGACAGCATCGAACATTGGTTATTCTTAAACAAAAACACAACATGTCCTGTCACAAAACAACCTCTTCCACTAGATTCTGATTTAACACCCAACCACACGCTTCGTCGTTTGATTCAATCTTGGTGCACACAAAATGCTTCACTCGGTGTTGATAGAATCCCAACCCCGAAACCACCTCTTACGAAAACTCATGTCGAGAAGCTTCTCAAAGGAATCAAAGATTCGAAGATTCGGATCAAGAGTTTAATGCAGTTGGAGTTACTAGCGGCGGAGAACGAAAGGAATAAGAAGTGTTTGTTGGAAAACGGGGTCCCAAAAGCGATGATCATGTTCATATATGATTGTTACAAAAAAGGTGATTTCCTCGAACTCGAAGGTATTGAAGAAGCTCTTAGTTTTCTACAATTTGTTAAGGTTCCTAACGAGGAAGCAAAGAATCTCTTATCAGAAAACAATGAAATAATTAATTGTTTAACATGGATATTAGATTTACCTTATGAGATGAAGAACTCAGTTGCTGTGAAATCTCATGCGGTTTTGGTGCTAAAAAGATTCATCAACAACTGTGATTCCATTCTTTTAGAGAGACTAAAACCGGAGTTTTTCAAAAGCGTTGTAAAAGCTTTAAAAACCGGTGTAATAACACAACAAGGGTTATGTGCTGCTTTACATGTTTTGCTATGTTGTTGTCCTCTGGGAAGAAACAGGTTGATGATGGTTGAAGCAGGTGCTGTTTGTGAACTGATAGAGATTGAATTAATGTCGATACCGGAGAAGAGAATCACGGAACTAACTTTCGGTATTTTGTTTCATTTGTGTTCTTGTGCTAATGGGAGGTTTCAGCTTTTGAGTCATGAAGGTTCGATTGCAGTGTTGACAGAGAGAATCTTGAGGGGTTCAATGGCGGTGGATGATAGAGCGGTGTTTATACTTTCTCTGATAAGTAAATTTTCAGCTACTAAGACGGTTTTGGAAGAGATGTTAAAAGTTGGAACTGTTTCTAAGCTTTTTGTTTTGCTTCAAGCTGATCATGCAAAGTATTTGAAAGATAAAGTTATGGAAATATTTAAGGCTCATTCTGAGGTTTGGAAGAATTCTCCTTGCTTTCCTCAAAATTCTTTTTATGCTAGTTTGCATAGGTGA 1242 0.3768 MDDIEVPQFFICPISLQIMKDPVTAITGITYDRDSIEHWLFLNKNTTCPVTKQPLPLDSDLTPNHTLRRLIQSWCTQNASLGVDRIPTPKPPLTKTHVEKLLKGIKDSKIRIKSLMQLELLAAENERNKKCLLENGVPKAMIMFIYDCYKKGDFLELEGIEEALSFLQFVKVPNEEAKNLLSENNEIINCLTWILDLPYEMKNSVAVKSHAVLVLKRFINNCDSILLERLKPEFFKSVVKALKTGVITQQGLCAALHVLLCCCPLGRNRLMMVEAGAVCELIEIELMSIPEKRITELTFGILFHLCSCANGRFQLLSHEGSIAVLTERILRGSMAVDDRAVFILSLISKFSATKTVLEEMLKVGTVSKLFVLLQADHAKYLKDKVMEIFKAHSEVWKNSPCFPQNSFYASLHR* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2723 413 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Psa6g2723 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Psa6g2723 413 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 407 - -
Psa6g2723 413 SUPERFAMILY ARM repeat 99 379 IPR016024 -
Psa6g2723 413 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Psa6g2723 413 PANTHER WDSAM1 PROTEIN 3 407 IPR045185 GO:0061630
Psa6g2723 413 SUPERFAMILY RING/U-box 4 82 - -
Psa6g2723 413 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Psa6g2723 413 Coils Coil 115 135 - -
Psa6g2723 413 CDD RING-Ubox_PUB 10 53 IPR045210 -
Psa6g2723 413 Gene3D - 94 400 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2723 Psa-Chr6 211685932 211687755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2723 2 402 U-box Gene Family AT3G11840 41.950 1.06e-112 336