Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2721 ATGAATCACATTCTTCATTATGATGTCAAGTGCTCAAATATCTTCTTGACGAAAGATCGTGACATACGTCTCAGAGATTTTGGACTTGCCAAAATGTTGACAGCAGATGATCTCGTTTCCTCGATTGTGGGAACTCCTAGCTATGTGTGCTCTGAGCTCCTTGCAGATATACCATATGACTCTAAATCAGATATTTGGTCATTGGGATGTTGTGCATATGAAACGGCGGGACATAAGCCTGCATTCAAAGCATTTGATATAGAAGCATTGATTATCAAGACTAGCAAGTCCATAGTGGCTCCACTGTCGACAAAATGTTACAGTGCAATTCAATCATAA 339 0.3982 MNHILHYDVKCSNIFLTKDRDIRLRDFGLAKMLTADDLVSSIVGTPSYVCSELLADIPYDSKSDIWSLGCCAYETAGHKPAFKAFDIEALIIKTSKSIVAPLSTKCYSAIQS* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2721 112 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2721 112 Gene3D Transferase(Phosphotransferase) domain 1 1 112 - -
Psa6g2721 112 Pfam Protein kinase domain 2 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2721 112 PANTHER SERINE/THREONINE-KINASE NEK4 1 109 - -
Psa6g2721 112 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 109 - -
Psa6g2721 112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 4 16 IPR008271 GO:0004672|GO:0006468
Psa6g2721 112 SUPERFAMILY Protein kinase-like (PK-like) 2 99 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2721 Psa-Chr6 211604116 211604454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2721 5 101 MAP Kinase Kinase Kinase AT1G53570 36.735 2.27e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Psa6g2721 Pkinase 6.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2721 K08857 - gmx:100788588 181.415