Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2660 ATGGGACAAGGGCAATCGAAAAGCGAGTTGCTCTACCAGCAAGTCAGTTATGGAAATTCCGATGGAATCAAAGCCCTTCACAGAGAAGGTGCAGGACTTGAGTATATGGATAGAGAAGGAAAAACACCCTTGATTGTTGCTTGTATGAATCCTGAACTTTACAATATTGCTAAAACATTGATCGAACTTGGAGCCAATGTCAATGCATACCGTCCCGGACGTCATGCTGGGACTCCGTTGCATCATGCAGCTAAAAGGGGCCTTGAAAGTATTGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTTTGGTGTTGAATGATGATTGTCAAACTGCTCTTGAGGTTGCTAGGGCTAAAGGAAATAGCAATGTTGTTCGTGCAATGGAGAGTCATTTGTGCTTGTTCTCCGGTTGGTTGCGGGAGTTTCATGGACCTGGGTTTCTAGAAGTAGTAGCTCCTAATTTGGTATCGAGGAAAGTTTGGGTGGTAGTTTTACCAGTAGGCTCACGTGGCCTCACCATGCCTTACAAGTTAGAGCTTGCCGTATATTACACTTTGCAGGATGCAAAACCGCGTACAATTGTTCCTCTGTGGAAGGCCAATTTAGAAGAACCAAGGCTTCGTCAGTCTGATCCGTCAGTGTCAATTACTGATAAGACTACCAAAACACGTCTTAAATTTGGGCCTGCAAATGAGAACGACAGGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGTAAGTCCAGCATTTTTGAATAATAATGTGGCTACCGTTCCACCAACAGCACCAACAGCACCACCTGCCGCTGAAGACCCAGAGTTGGCTATGGCTATCCATGCATCTATTCAGCATGCCATCCACGAGAGGCCAAGCTTTCCTGATGCAAGTTCTTCCATCAGTGGAGCGAATGCAGGGCAAGGTTTTCTCGGTACACCAAATCCAAATACAAATGCTAATGAGTTTGTACACGAACCTGTTTCAGTTGACAATACTCAACATGTCCAGAACGATGTCAATGTCTCTGCTGGCCACACTGCCAGTGGTCTCGATGTCAATCCATCAGCTCCTCCATTTGCTGACGAGGTTCCATTTGATGGCCCGATTCATTATCCGTCAATTGATTCGAGCCCTGTTGATGTATCGTCTTCAGTAGTTGGGAAGCTCCCTAACGAAGAAGGAATGACTGTTGGAGGAAGTGGTTCAACGTGCGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCATGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAATGAAGTTAAAACCAAGAAATGGGGTTGCCCTGTTTGTCGAGCTAAGATAGACCAGATCATAAAGCTATATCATGTTTGA 1380 0.4514 MGQGQSKSELLYQQVSYGNSDGIKALHREGAGLEYMDREGKTPLIVACMNPELYNIAKTLIELGANVNAYRPGRHAGTPLHHAAKRGLESIVKLLLLHGANPLVLNDDCQTALEVARAKGNSNVVRAMESHLCLFSGWLREFHGPGFLEVVAPNLVSRKVWVVVLPVGSRGLTMPYKLELAVYYTLQDAKPRTIVPLWKANLEEPRLRQSDPSVSITDKTTKTRLKFGPANENDRQQLTWFSNACKGIPQVSPAFLNNNVATVPPTAPTAPPAAEDPELAMAIHASIQHAIHERPSFPDASSSISGANAGQGFLGTPNPNTNANEFVHEPVSVDNTQHVQNDVNVSAGHTASGLDVNPSAPPFADEVPFDGPIHYPSIDSSPVDVSSSVVGKLPNEEGMTVGGSGSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQIIKLYHV* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2660 459 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Psa6g2660 459 SMART ring_2 408 446 IPR001841 -
Psa6g2660 459 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 459 - -
Psa6g2660 459 SMART ANK_2a 75 104 IPR002110 GO:0005515
Psa6g2660 459 SMART ANK_2a 39 69 IPR002110 GO:0005515
Psa6g2660 459 Gene3D - 3 144 IPR036770 -
Psa6g2660 459 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Psa6g2660 459 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Psa6g2660 459 SUPERFAMILY RING/U-box 407 453 - -
Psa6g2660 459 Pfam Zinc finger, C3HC4 type (RING finger) 406 453 - -
Psa6g2660 459 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Psa6g2660 459 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Psa6g2660 459 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Psa6g2660 459 PANTHER ROLLING PEBBLES, ISOFORM B 1 459 - -
Psa6g2660 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 458 IPR013083 -
Psa6g2660 459 ProSiteProfiles Zinc finger RING-type profile. 408 447 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2660 398 456 C3H Transcription Factor Family AT3G06140 33.898 2.67e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2660 - - lang:109354249 683.33