Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2655 ATGGTAAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAGAGGTCCTTGGTCTCTTGAAGAAGATCAAATCCTCATTTCTTACATCCAAAAACATGGCCATGGCAACTGGCGTGCTCTCCCAAAACTTGCAGGTTTGTTAAGGTGTGGCAAGAGTTGCAGACTTCGTTGGATTAACTATTTGAGACCTGATATCAAGAGAGGGAATTTCACAAATGAAGAAGAAGAAAACATCATTAAGCTTCATGAAATGCTTGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCGGGAAGAACAGACAATGAAATAAAAAATGTGTGGCACACACATTTGAAGAAGAAGCTAAACAAAACAAGCTCAGAATTATCTAACAAAAGGGTGATCTCAAAACAAAAAATCAAACGTTCTGATTCAAATTCAAGCACAATAACTGAATCAGAATCTGCATCTGCATGCACTACTAGTTCTAGTGATGATTTTTCATCCGTTGGTAAAAGAAAAGATGTAATAAAAAGTGAAGACATTGAGTCTATGGAAGAACCAATGCCAGAAATTGATGAGAGTTTTTGGTCAGAAGCAGCAGCATTGGATGAAACTTCAACTCATATGACATCAAGTTCTTTGACAATCTCAAATGAGATATTGCCACTTCAATACCCTTCTAACTGTGGTGACATTTTTCCACAAGAAAGTAAGGTTGATTATAATTCTAACTTAGATGATGGCATGGATTTTTGGTATGACATATTCATTAGGACTGGAGATCAAATAGAATTGCCAGAGTTCTGA 792 0.3712 MVRAPCCEKMGLKRGPWSLEEDQILISYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEENIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLNKTSSELSNKRVISKQKIKRSDSNSSTITESESASACTTSSSDDFSSVGKRKDVIKSEDIESMEEPMPEIDESFWSEAAALDETSTHMTSSSLTISNEILPLQYPSNCGDIFPQESKVDYNSNLDDGMDFWYDIFIRTGDQIELPEF* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2655 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa6g2655 263 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa6g2655 263 CDD SANT 69 112 IPR001005 -
Psa6g2655 263 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa6g2655 263 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa6g2655 263 Gene3D - 14 66 - -
Psa6g2655 263 MobiDBLite consensus disorder prediction 135 158 - -
Psa6g2655 263 CDD SANT 16 61 IPR001005 -
Psa6g2655 263 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Psa6g2655 263 MobiDBLite consensus disorder prediction 127 158 - -
Psa6g2655 263 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa6g2655 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa6g2655 263 SMART sant 13 63 IPR001005 -
Psa6g2655 263 SMART sant 66 114 IPR001005 -
Psa6g2655 263 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 259 - -
Psa6g2655 263 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 259 - -
Psa6g2655 263 Gene3D - 69 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2655 Psa-Chr6 205356724 205359656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2655 1 263 MYB Transcription Factor Family AT2G31180 50.373 3.95e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g2655 Myb_DNA-binding 4.8e-15 CL0123