Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa6g2652 | ATGGCGCAACAACACAACAACCTACTTCCTTGCAAATCTGATGGCATTTGTATGATCTGCAACCATAGGCCTCTAGAAAGTGAAATTGTGTGTTGCAGAACTTGTGCAACACCATGGCATGTTCCATGTTTACCTCTCCGTCCCCTGAAAATCTTCGATTGGAATTGCACTGATTGTTCTCAACCTGTGGATGTCAACCACGTCGCCGATGCATCTGCTCCTCCTATCACTTGTAGTCTTGTTTCCACCATCTACGCCAATGAGAATGATACTTCACTCACTGGTGAAGAAAGGGCCAAGAAAAGTCATGAAGTCTATGATAGATCTCCTAAACCACCTTTTGAAAACAACAACAAATATAATGACTTGTATGGCGTTTTCTATAGTAAGCTTAACTGCACTTTCTGCTTGCACTTGCCTGAGAGGCCTATCACTACACTATGCGGGCACAATTTTTGCATGAAATGTTTTGAGAAATGGATTAAGCAAGGAAAAAACAATTGCCCAAATTGTAGGGCTGAAATTCCAGCAAATATGGCGAGTGATCCACAAATCAATTCACAACTGGAGACCACCATTCAAATGGCTATATCAGAGAGTGTTGCTCATGGGAAGATATTTGTGACGATTTCAAAAGATCATTTTGGACCCATTGTTGTTGAGAATGATCCAATAAGAAAACGGGGAGTTCTTGTTGGTGATACATGGGAGGGTTTGATGGAATGTATCCAATGGGGTGCTCATTATCCCCATGATTCCAGGATTGCTAGTCAGAGTGTTTATGGTGCTCAATCTGTTGCTCTATCTGGTGGTTACATTGATGAGATAGATCATGGTAATTGGTTTATTTATAGTGGAAGTTGTGGAAATGACCTTAGTGGTAACAAACGTACCAACAAAAATCAGTCCTTTGATTAA | 918 | 0.4085 | MAQQHNNLLPCKSDGICMICNHRPLESEIVCCRTCATPWHVPCLPLRPLKIFDWNCTDCSQPVDVNHVADASAPPITCSLVSTIYANENDTSLTGEERAKKSHEVYDRSPKPPFENNNKYNDLYGVFYSKLNCTFCLHLPERPITTLCGHNFCMKCFEKWIKQGKNNCPNCRAEIPANMASDPQINSQLETTIQMAISESVAHGKIFVTISKDHFGPIVVENDPIRKRGVLVGDTWEGLMECIQWGAHYPHDSRIASQSVYGAQSVALSGGYIDEIDHGNWFIYSGSCGNDLSGNKRTNKNQSFD* | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa6g2652 | 305 | SUPERFAMILY | FYVE/PHD zinc finger | 5 | 62 | IPR011011 | - | |
| Psa6g2652 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 74 | IPR013083 | - | |
| Psa6g2652 | 305 | Gene3D | - | 200 | 305 | IPR036987 | - | |
| Psa6g2652 | 305 | SUPERFAMILY | PUA domain-like | 202 | 301 | IPR015947 | - | |
| Psa6g2652 | 305 | SMART | G9a_1 | 220 | 302 | IPR003105 | - | |
| Psa6g2652 | 305 | MobiDBLite | consensus disorder prediction | 92 | 111 | - | - | |
| Psa6g2652 | 305 | MobiDBLite | consensus disorder prediction | 93 | 110 | - | - | |
| Psa6g2652 | 305 | SUPERFAMILY | RING/U-box | 125 | 194 | - | - | |
| Psa6g2652 | 305 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 7 | 197 | - | - | |
| Psa6g2652 | 305 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 201 | 305 | - | - | |
| Psa6g2652 | 305 | ProSitePatterns | Zinc finger PHD-type signature. | 17 | 59 | IPR019786 | - | |
| Psa6g2652 | 305 | SMART | ring_2 | 133 | 171 | IPR001841 | - | |
| Psa6g2652 | 305 | SMART | PHD_3 | 16 | 60 | IPR001965 | - | |
| Psa6g2652 | 305 | ProSiteProfiles | YDG domain profile. | 225 | 305 | IPR003105 | - | |
| Psa6g2652 | 305 | ProSiteProfiles | Zinc finger RING-type profile. | 133 | 172 | IPR001841 | - | |
| Psa6g2652 | 305 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 201 | 305 | IPR045134 | - | |
| Psa6g2652 | 305 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 7 | 197 | IPR045134 | - | |
| Psa6g2652 | 305 | Pfam | Zinc finger, C3HC4 type (RING finger) | 130 | 175 | - | - | |
| Psa6g2652 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 199 | IPR013083 | - | |
| Psa6g2652 | 305 | Pfam | SAD/SRA domain | 228 | 304 | IPR003105 | - | |
| Psa6g2652 | 305 | CDD | RING-HC | 133 | 171 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa6g2652 | Psa-Chr6 | 203998102 | 204020018 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa6g2652 | 9 | 305 | C2H2 Transcription Factor Family | AT5G39550 | 43.953 | 5.03e-87 | 271 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa6g2652 | K10638 | - | gmx:100786796 | 337.806 |