Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2640 ATGTCTCCTACTATGATATCTGCTATTGTTTTCCTCAGATGTGCTGTTTCCAAGAGTGCACCATTGAATGCTGAAACCATTTTCACAGTTCTTGCAACATTGAGGAACATGGAAGAACCTGTTAGAATGATCCCTGAGGCTCTATCCGTTAATATTCAAGTTAAGGTTTCCTTCGACCGTCTCAATAACTTTTTGCTTGATGAAGAACTAAACAAAGATGATAGTGAAAGAAACTTCAAGCAATGTTCTGTTAATGCTGTGGAAATTCAAGATGGCAACTTCATTTGGATCGTGCCAGTCTTGCTTATGTTTTCTAAATCTTCATGGATACAAAGTGGAACAGTTCAAGCTAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAAAGCAATTAAAGCAAGTGCCTTAGATAAGGATATCAATGAGTTTAGCCATGGAGATCTTACAGAAATTGGTCAGAGAGGGATAAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCAAATATCTACCTTCTTGACGTTCCTTTCAGTGCAATTGACGCACATACAGTTGACTGCGCTTTTGGGATTAAGAGCTTCTACTGCTTTCTTCTCAAGCTTCACTGCTTTTCTTTGATTCAAATCCTCCATGATTTTACTAATATTTTCTCTCTTATACTTGAATTTTTACTCGATGCGAGTTTTGTTCAGATTCTGGCTTGCTGTAGCATGTTTGTGGATATTACATTGTTGCCGACTGCATTACTTCATGGTTTTGTGAGGCACTGTATGATGATGGTGAGCTTTGATGGATTGGTGCAAGCCTGTTTTGGTATGGTTCTACAGTAG 864 0.3843 MSPTMISAIVFLRCAVSKSAPLNAETIFTVLATLRNMEEPVRMIPEALSVNIQVKVSFDRLNNFLLDEELNKDDSERNFKQCSVNAVEIQDGNFIWIVPVLLMFSKSSWIQSGTVQANILFGKPMDKTRYEKAIKASALDKDINEFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDANIYLLDVPFSAIDAHTVDCAFGIKSFYCFLLKLHCFSLIQILHDFTNIFSLILEFLLDASFVQILACCSMFVDITLLPTALLHGFVRHCMMMVSFDGLVQACFGMVLQ* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2640 287 ProSitePatterns ABC transporters family signature. 161 175 IPR017871 GO:0005524
Psa6g2640 287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 195 IPR027417 -
Psa6g2640 287 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 22 263 IPR003439 GO:0005524
Psa6g2640 287 Gene3D - 55 223 IPR027417 -
Psa6g2640 287 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 104 200 - -
Psa6g2640 287 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 96 - -
Psa6g2640 287 Pfam ABC transporter 115 188 IPR003439 GO:0005524
Psa6g2640 287 PANTHER BNAA01G25250D PROTEIN 1 96 - -
Psa6g2640 287 PANTHER BNAA01G25250D PROTEIN 104 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2640 Psa-Chr6 202956196 202957707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2640 78 195 Calmodulin-binding Proteins AT2G36910 30.252 4.23e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2640 - - lja:Lj3g3v2693530.1 294.278