Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2631 ATGGAAGATGTATCAGTGTTTAAATATGAAAAGGTCTCGCCATTCTTCGCCTGTATTTTGTGTGATCGAACTCTAAGGAATGCCGCCACAATTTCTGAATGCTTGGATACTTTTTGCAGGGAATGTATAGAAAGGAAGATAGTAGATGAGAATCTAAATCATTGTCCAATATGCAATGTAGACTTGGGATGTTCTCCATTAGACAAACTAAGGACGGATAATAATAAGAAGACAATGATTAGTAAAGTTCTCATCTCTACAAAAGAATATTTTGAGACAGATGAAAATGTTGGTTCAACTCAAGTAGTAACCAAAAAGAGGAAGAACTCTCGATCCTCTTCGCAGTCCAACGCGAAAAAGGCTAAAAAAGATTCAAAGAAAATTAAGAAAGAGGTAAAAAAAGGAAAGAAGATTCTGCAAGAGCCAAGGCAGCTGCAGGAACAAGTTCTTATCACTCCACAGGAACCAAAAACTCCTGCTTCTGAAATCGCTGTTGCAGCAGGTGTTAAGAAAGACGCGAAACAGCAACGCGGAATAGAAATTTTGGATGAAGTTTCTACAATTCTATCTGCTAGAAAAGCAAAAAATGTGGCGAGGAAAAAGTTTATCAGAACTGAATTAGATTCTACTTCTCAGCCTGACAAAGCCACATCTGATGGAAAGAAAGAAGATATCCGCCCTCGGCTTGAGACATTCACCGAGACTCCGAAAATCAGATTTAAGAGTTCTTCAAAACCAGAATCATCAAACCAGAACTCAGTGTTCAAGAATGTTTCAAAGGACAGAGCTGAGTTAAGGAAAGAAAAAGCTGCTGCTGTTAGCAAGCCATTGAATTGGTTTGTGGAAACTACAAACGCGGACGAGTCTCTTAATAACTCCACCCTGCAAGGAAATGGCCTCATTCCAATGCTTGTGGACTCTAGTGACAACGACGACTCTCGTAGCGTGTCTAAGGTTGATATTAACAAGCACTGTAACTACCAAACAGAAGCAGGTGGCGATCAAAACGAGTCTGTTCCATCAAAATCAAGTTCCTTGAAGTTTAAGATTAAGAGGGTGGACACAAACCAAGAGAAAAGAGTGAGATTTTCAGAGGACTTGAACCTTCCCGCACCACCTGAAACTGAAACCAAAAAAGAATTTGGTCCTATTTGGTTCTCCTTGATCGCTTCTAACGATCGAGAACTCGGTGCGCTGCCACAGATATCTTCTCATTACTTAAGAGTCAAGGATGGAAGTTTAACTGTTTCTTATATCAAAAAGTATCTTGTGAAGAAGCTTGATCTTGCTAGTGAAGCCGAGGTGGAGATTTTATTGGGAGGGAAGCCAGTTTATTGTTCAATGCAGGTGCAAAACTTGATGGAGATGTGGTTGGAAACAATGTCAAAGAAAGAAATGATTCAGACATCTGTTGGAAGTTCTGCTAAGGATTTTGTTATGGTTCTTTCTTATGGTAGAAAGGCTTGA 1467 0.3967 MEDVSVFKYEKVSPFFACILCDRTLRNAATISECLDTFCRECIERKIVDENLNHCPICNVDLGCSPLDKLRTDNNKKTMISKVLISTKEYFETDENVGSTQVVTKKRKNSRSSSQSNAKKAKKDSKKIKKEVKKGKKILQEPRQLQEQVLITPQEPKTPASEIAVAAGVKKDAKQQRGIEILDEVSTILSARKAKNVARKKFIRTELDSTSQPDKATSDGKKEDIRPRLETFTETPKIRFKSSSKPESSNQNSVFKNVSKDRAELRKEKAAAVSKPLNWFVETTNADESLNNSTLQGNGLIPMLVDSSDNDDSRSVSKVDINKHCNYQTEAGGDQNESVPSKSSSLKFKIKRVDTNQEKRVRFSEDLNLPAPPETETKKEFGPIWFSLIASNDRELGALPQISSHYLRVKDGSLTVSYIKKYLVKKLDLASEAEVEILLGGKPVYCSMQVQNLMEMWLETMSKKEMIQTSVGSSAKDFVMVLSYGRKA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2631 488 MobiDBLite consensus disorder prediction 208 258 - -
Psa6g2631 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 137 IPR013083 -
Psa6g2631 488 MobiDBLite consensus disorder prediction 101 139 - -
Psa6g2631 488 ProSiteProfiles Zinc finger RING-type profile. 18 59 IPR001841 -
Psa6g2631 488 MobiDBLite consensus disorder prediction 101 116 - -
Psa6g2631 488 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 182 487 IPR044807 GO:0004842
Psa6g2631 488 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 8 154 IPR044807 GO:0004842
Psa6g2631 488 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 8 154 - -
Psa6g2631 488 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 182 487 - -
Psa6g2631 488 SUPERFAMILY RING/U-box 10 68 - -
Psa6g2631 488 MobiDBLite consensus disorder prediction 215 235 - -
Psa6g2631 488 MobiDBLite consensus disorder prediction 236 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2631 Psa-Chr6 201416380 201421704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2631 4 113 C3H Transcription Factor Family AT2G30580 40.909 1.12e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2631 K16277 - pop:7474161 234.958