Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2599 ATGGTAGGATTGGAACTCATACCAATAGGTACAATTCTAACTGTTGTAACAAACCAAGTTTTGAGAACAGCTCATGCTGCAGCTGATGTTCTTATCGGTAAAGAGAGTTTCAAGGCACTTTCGAAATATCTATTCGATATCGAGCCAGTATTAAAGGAGTTACAGCGTCAGGAATTGAATGATTCTCAACCTGCAAGATTTGGTCTAGAGTCCCTCGAAGCAGATGTTAAAAGAGCCAATACTTTGGTCGAGAAATATAAGAATCGCGGCCGGTTCTACTTACTCTTTAAGTGTCGTTCGATAGTTGAGGAAGTTGAACAAGTTACAAGGGATATTGGAAAGTCTTTAGCTGCACTGTCGATTGCGAATACTGAAGTGCTGTCGAGGATTTCTGATCAGGTTGATAAGCTACAAGATGAGATGCAAAGAGTTGAGTTCGAGGCTTCGCAATCTCAGCTTGAGATTGTTGATAAGTTGAACCAAGGTTTAAGAGATCAGAAGCAAGATCAGGCTTTCGCGAATGATATACTCGAGGAGATTGCAATGGCGGTTGGAGTTCCCATGGAACCGTCCGAGATAGGAAAAGAGTTGGCGAGCTTTAGGAAGGAAAAAGAAGAGGCTGCTGATAGGAAAGAAAAGGCAGAATTTGTTATCTTGGAGCAGATCATTAAGTTGCTCTCAAGAGCTGACGCGGCTAGAGATTACGAAGAGGTTAAGAATCAATACTTTGAAAGGGTTCAAGTGATAGAAAGATATGATTCGAGGGAGAAATATATCCAACCGCTTAATTCGTTCATTTGCTGTATAACTGGAGCGGTTATGGTTGATCCTGTTAGCCTTAACACAGGTACAACATGTGAGAGATCAGCGATTGAAGGTTGGTTTTACGACGGAAACAGGACGGATCCAAAAACAAAAGAGGTTATTGAAGATACTAGCTTGAAGTCTAATATTCCGATAAGACAATCGATCGAAGAGTGGACAGAACTTAATTATTGCCTTCTGATAAGGTCTATCAGGGAGAATTTGTTATCGAATTCTAATCTGCAAGAGTCCTTGAGCCAAATGCAGGCTCTAATAGCTGAGAATTCTATTAACAAGGATTGGATCTCTATTGGAGAACTTACTGATAATGTTATCTCGATCCTTGGGAAATCTAATGACAGAGAAGTGAAGATGAAGATTTTGATCACTTTGAAAGATGCTGTAGAGGGTCATGCAAGAAACAAGGAGAAATTGGCTGAATCAGAAGGATGGGATCACATCATTGCGTGCTTAGAAAGCGAATCTAACATTTCAAAGGCGGCAATTGATTTGTTATACGAGTTGCTTCAAGACCGATCTGGTTGGAATCAATGTTTTTGCAAAAAACTTTCTGAGAATGACACCGCAGTTCCCTTCCTTGTAACTCTTGTAAAGGACTCTGGAAATGATTCAGCCGAGGTTGCGCAGAAGATTTTAAAGGAGCTTTTTGAAATAAACGAAAGCAGCATTGTCACTGCTGCTAGTTGTGGCTGGCATAAGCCACTAGCGGATCGTATGATTCTAGAACCTGATTCAAGAATGTCGATGGCAAAAGCGATAGTTAATTTGGAGTTGGATGATTTAAACTTGATAGAACTCGGCAAGGAAGGAGTTATACCTCCTTTGATCGAAATGGTGTCTGGAAGTATCGAATTGAAAGACCTGTCGTTATCGGCTCTTGTTAAATTAGCCGGATTTCATGCCAACAAGGGAATTATCGCTTCATCTGGAGGTGTTCCTCTTATTCTAGAATTAATGTTCTCTCCTCGGACAAGGGCTTTCATTACCATAAAATGCTCCGAAATTCTTGAGAAACTTTCTTCTTCCGATGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTAGATTCCATCATCACCAATTTGCTACATTTGCAACAGACTACGAATTCAGGCCACAACCTCCGAAAGCCTACGCTACGCGCTCTCCTTGGCATTTGCAAATTTGAGACAGGTTTAGTGAAGAAAGCGGTTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTTGATGATTCTGACTCAGAAATCCGAGAGACTGCGATAAACCTGCTCTTTCTTTTCTCTCAGCATGAACCAGAAGGAGTTGTTGAATACCTCTTCAAGCCTAGGAGGCTAGAAGCTTTGATTGGATTTCTTGAGAACGATAACAACGATAACGTGCAAATGGCTGCAGCCGGTTTACTAGCCAACCTACCGAAATCAGAACGAGAACTAACCTCAAAGTTGATTGAAATGGGAGGACTTGACGCTATCATAAGCATTTTAAAGACCGGCAAAATGGAGGCAAAAGAACACGCTCTCAGCGCACTCTTCAGGTTCACGGATCCTACAAATATTGAGTCACAGCGCGACTTAGTTAAACGCGGAATATATCCTTTGCTTGTAAACTTTCTCAACACCGGTTCAATCACTGCAAAGGCAATAGCAGCAGCTTTCATCAGCGATCTTTCAATGAGCACACCAAAGCTAACAGTTGCTTCAAAACCAACCGGATGCTGGTTTTGCAGACCATCGCGCGTTCCTCTATGCGCAGCGCACGATAGCGTATGCAGCGCGACAACCACATTCTGTCTTCTGGAAGCAGACGCTTTACCTGGTTTGATAAAGCTGTTACAAGGAGAGGTTCATGCAACTGCTTTTGAAGCGATACAAACACTTTCTACATTGGTTTTGGAGGAGTTTCCCCATCGAGGCGCTCGTTTGTTGCATGAGTCGAATGCAATGAGGCCTTTATTGGAGATTTTGAATTGGGGCAGCGAGTCACTTAAGGCGGAAGCTTTAGGACTTTTGGAGAAGGTTTTTGTGTCAAAGGAAATGGTGGAATACTACGGAATGACGGCGAGATCGCGGCTAGTTTGCTTGACTGGAAATAATATATATGGAGATGGTCACCTTAGAAGGAAAGCTGCTAAGGTATTGTCATTGCTTGAACGTTATTCTAAGTCTTCATCATCTGCTATCTCTGGAGTTTTGGAGTGA 3042 0.4201 MVGLELIPIGTILTVVTNQVLRTAHAAADVLIGKESFKALSKYLFDIEPVLKELQRQELNDSQPARFGLESLEADVKRANTLVEKYKNRGRFYLLFKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVDKLQDEMQRVEFEASQSQLEIVDKLNQGLRDQKQDQAFANDILEEIAMAVGVPMEPSEIGKELASFRKEKEEAADRKEKAEFVILEQIIKLLSRADAARDYEEVKNQYFERVQVIERYDSREKYIQPLNSFICCITGAVMVDPVSLNTGTTCERSAIEGWFYDGNRTDPKTKEVIEDTSLKSNIPIRQSIEEWTELNYCLLIRSIRENLLSNSNLQESLSQMQALIAENSINKDWISIGELTDNVISILGKSNDREVKMKILITLKDAVEGHARNKEKLAESEGWDHIIACLESESNISKAAIDLLYELLQDRSGWNQCFCKKLSENDTAVPFLVTLVKDSGNDSAEVAQKILKELFEINESSIVTAASCGWHKPLADRMILEPDSRMSMAKAIVNLELDDLNLIELGKEGVIPPLIEMVSGSIELKDLSLSALVKLAGFHANKGIIASSGGVPLILELMFSPRTRAFITIKCSEILEKLSSSDDGIDFFVDGEGKQLELDSIITNLLHLQQTTNSGHNLRKPTLRALLGICKFETGLVKKAVLAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDNNDNVQMAAAGLLANLPKSERELTSKLIEMGGLDAIISILKTGKMEAKEHALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSITAKAIAAAFISDLSMSTPKLTVASKPTGCWFCRPSRVPLCAAHDSVCSATTTFCLLEADALPGLIKLLQGEVHATAFEAIQTLSTLVLEEFPHRGARLLHESNAMRPLLEILNWGSESLKAEALGLLEKVFVSKEMVEYYGMTARSRLVCLTGNNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2599 1013 Coils Coil 69 89 - -
Psa6g2599 1013 SUPERFAMILY ARM repeat 362 720 IPR016024 -
Psa6g2599 1013 Gene3D - 339 512 IPR011989 -
Psa6g2599 1013 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 752 IPR000225 GO:0005515
Psa6g2599 1013 Gene3D - 513 845 IPR011989 -
Psa6g2599 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Psa6g2599 1013 SUPERFAMILY RING/U-box 247 330 - -
Psa6g2599 1013 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Psa6g2599 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Psa6g2599 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Psa6g2599 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Psa6g2599 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Psa6g2599 1013 SMART arm_5 712 754 IPR000225 GO:0005515
Psa6g2599 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Psa6g2599 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Psa6g2599 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Psa6g2599 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Psa6g2599 1013 SMART arm_5 916 956 IPR000225 GO:0005515
Psa6g2599 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Psa6g2599 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Psa6g2599 1013 Coils Coil 127 154 - -
Psa6g2599 1013 Gene3D - 8 124 IPR036537 GO:0007166
Psa6g2599 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 333 IPR013083 -
Psa6g2599 1013 SUPERFAMILY ARM repeat 635 1001 IPR016024 -
Psa6g2599 1013 Gene3D - 856 1008 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2599 Psa-Chr6 196949760 196953625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2599 264 968 U-box Gene Family AT1G20780 26.358 4.12e-38 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2599 - - gmx:100783638 1568.13