Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2594 ATGTTGTTGTTGTTATTGTTGTTGGGTTTAAGGAAGAGGATGGGGAGAGGAAAGATTGAGATAAAGAAGATTGAGAATTTGAATAACAGACAGGTTACATTTTCAAAGAGACGCAATGGGTTGATTAAGAAAGCCAAAGAGTTGTCTGTTCTTTGTGATGCAGAGGTTGCTATTTTGATATATTCCGCCACTGGAAAACTCTATCAGTTTTCAAGCACAAGCATGGAGCACGCCCTTTCAAGGTATGATACTAGAAATCTTGATTTGAATAAAGCAGAGCAACAACAACAACAACGTAGTGAACAACCTACAGTACAAGTTGTGGAGCTTAATACTACTAGTCTTCTGCAGGAAGAAATAACAAAACTTCGTTCAGCTTACTCAAGAATGAGCGGCAAGGAGCTTGATGGATTGGGCTTTAAAGAACTACAACATCTCGAAAATCAACTATGCGAAGGGATATCAGCTGTCAAAAGTAAGAAGGAACAAGTGCTTGTTGAACAACTTAAGAGATCCAGATTACAGGAGGAAAAGGCAATGATGGAGAATGAAGCTCTTCGGAAACAGCTTGAAGAGATAGAAAAGAAAAGAAAGGCAGAGTTACTTGAATATAATTCATTGGATCTAAAACCAGTTTTGAATTTTGGTTCAGAGGATAAAGAGATTTCAGATACTTGCTTACAATTAGGGTTGTCATCAGATTATGGCCGCAAGAGGAAAGCATTAAAGATAGAAGATTGCGACGACTCAGGAAGTCAGGTGGCTTCACAGTGA 774 0.385 MLLLLLLLGLRKRMGRGKIEIKKIENLNNRQVTFSKRRNGLIKKAKELSVLCDAEVAILIYSATGKLYQFSSTSMEHALSRYDTRNLDLNKAEQQQQQRSEQPTVQVVELNTTSLLQEEITKLRSAYSRMSGKELDGLGFKELQHLENQLCEGISAVKSKKEQVLVEQLKRSRLQEEKAMMENEALRKQLEEIEKKRKAELLEYNSLDLKPVLNFGSEDKEISDTCLQLGLSSDYGRKRKALKIEDCDDSGSQVASQ* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2594 257 PANTHER BNAC04G24260D PROTEIN 14 245 - -
Psa6g2594 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 14 245 - -
Psa6g2594 257 CDD MADS_MEF2_like 15 82 IPR033896 GO:0000977|GO:0045944
Psa6g2594 257 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Psa6g2594 257 SUPERFAMILY SRF-like 15 85 IPR036879 GO:0003677|GO:0046983
Psa6g2594 257 Coils Coil 169 210 - -
Psa6g2594 257 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Psa6g2594 257 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Psa6g2594 257 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Psa6g2594 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 70 IPR002100 GO:0003677|GO:0046983
Psa6g2594 257 ProSitePatterns MADS-box domain signature. 16 70 IPR002100 GO:0003677|GO:0046983
Psa6g2594 257 Gene3D - 27 106 IPR036879 GO:0003677|GO:0046983
Psa6g2594 257 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Psa6g2594 257 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa6g2594 257 Pfam K-box region 111 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2594 Psa-Chr6 195400681 195402653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2594 14 230 MADS-box Gene Family AT3G57390 46.753 1.96e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa6g2594 K-box 3.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2594 - - gmx:100792278 311.227