Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2587 ATGGAAAACAGTGTTGCATATGAGAGTGATCTTAACATGAAGGATACTGAGCTAAGACTAGGACTTCCAGGGACAGAAGAAAATGAGAATGAAAAAGCACTTTCTGTTAAGGTTTCCAACAAAAGATCATTGGTTGAAACCTCTAAGGACAGTGCAACTGGTTCAAAAACCTCTGAATCTGATGCAGCACCTCCTTCTAAGGCAAAAATAGTGGGGTGGCCACCAATAAGATCTTATAGGAAGAACAGTTTGCAAGAGGCTGATGCTTCTGGGATTTATATAAAAGTGAGTTTGGATGGAGCTCCTTACCTTAGAAAGATTGATTTGAGAATCTATGGAGGTTATGCACAGCTTCTTAAAGCTTTGGAAAACATGTTCAAGTTAACTATTGGTGACTATTCAGAGAAAGAAGGTTATAAAGGATCTGAATATGAACCTACGTATGAAGATAAAGATGGTGATTGGATGTTAGTTGGAGATGTTCCATGGAACATGTTTGTGACATCTTGCAAAAGACTAAGAATCATGAAAGGAACAGAAGCTAGAGGTGTTTGA 555 0.382 MENSVAYESDLNMKDTELRLGLPGTEENENEKALSVKVSNKRSLVETSKDSATGSKTSESDAAPPSKAKIVGWPPIRSYRKNSLQEADASGIYIKVSLDGAPYLRKIDLRIYGGYAQLLKALENMFKLTIGDYSEKEGYKGSEYEPTYEDKDGDWMLVGDVPWNMFVTSCKRLRIMKGTEARGV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2587 184 ProSiteProfiles PB1 domain profile. 91 178 IPR000270 GO:0005515
Psa6g2587 184 MobiDBLite consensus disorder prediction 1 67 - -
Psa6g2587 184 SUPERFAMILY CAD & PB1 domains 82 177 - -
Psa6g2587 184 MobiDBLite consensus disorder prediction 40 62 - -
Psa6g2587 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 184 IPR003311 GO:0005634|GO:0006355
Psa6g2587 184 MobiDBLite consensus disorder prediction 12 36 - -
Psa6g2587 184 Gene3D - 85 184 - -
Psa6g2587 184 PANTHER AUXIN-INDUCED PROTEIN 10 184 - -
Psa6g2587 184 Pfam AUX/IAA family 48 183 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2587 Psa-Chr6 193588518 193590364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2587 94 182 B3 DNA Binding Superfamily AT2G46530 37.079 3.29e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Psa6g2587 AUX_IAA 2.3e-50 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2587 K14484 - gmx:100527777 281.182