Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2579 ATGATTTGCATAAAAATGGAGGAAAGAGAGAATTTTGGTGCTGTGAATGCAGTGGCGGGTAATCAAGTCGCAGTGAGCTTCCATGGAGCTCCTAGGATTGAAAACAACTTGGATTTTTCCATGGCGACGGTGCCAGTGTCGATGCCGGTGACGGCAGTGAAGAAGAAGAGGGGGAGGCCAAGGAAGTATGGGCCGGACGGGAAGCCTACTCCTGGGTCTGCGACTGCGCTTTCACCGATGCCGATTTCTTCATCGATTCCTTTGACTGGAGAGTTCTCTGCTTGGAAAAGGGGTGGAGGGAAGCCTGTTGAATCTATCAAGAAATCATCTTTTAAATTTGATTTTGAAAGTCCACCAGGACAAGGTGTAGGTGTAAGTGCAGGTGCAGTTGCAGGTGCAGGTGAGAGAATTGCAAAAGCAGTAGGTGCCAATTTCACGGCTTATATGCTTACCGTGAATTCTGGCGAGGATGTCACCATGAAAATTATGTCCTCCCAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGCACAATTTCAAATGTTACACTTCGCCAATCGACTTCTTCAGGGAGTACTTTAACATATGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTCATGCCAACTGATAATGGAATTACAAAAAGCAGATCTGGTGGAATGAGCGTCTCTTTGGCAGGTCCGGATGGTCGAGTATTGGGCGGCGGGCTCGCTGGTTTGCTTATAGCTTCTGGTCCTGTGCAGGTTGTTTTGGGAAGTTTTCTTCCTAATCACCATCTAGAGGACAAAAGCAAGAATCAGAGGACGGAGCATACTATATCAACCATTACACATAATCATCCTCCTCCACATGTTAATCATCATCATCACAAGTCTAATGAAGTAAGTTTCGGTGGCGTGAAACCTATTATGACACCTGCTGCATTTCAAGAAGAGAAAATTGTTTCTTTCAACAACAACAACAACGTTCAAGACTCTAGGAACAATTCATCTGCTGATGACAGAGATCCTTTACCTGAAAAGGATTCTAATCATAGCCAATCAAATGCTTGA 1068 0.4494 MICIKMEERENFGAVNAVAGNQVAVSFHGAPRIENNLDFSMATVPVSMPVTAVKKKRGRPRKYGPDGKPTPGSATALSPMPISSSIPLTGEFSAWKRGGGKPVESIKKSSFKFDFESPPGQGVGVSAGAVAGAGERIAKAVGANFTAYMLTVNSGEDVTMKIMSSQQGSRAICILSATGTISNVTLRQSTSSGSTLTYEGRFEILSLSGSFMPTDNGITKSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVLGSFLPNHHLEDKSKNQRTEHTISTITHNHPPPHVNHHHHKSNEVSFGGVKPIMTPAAFQEEKIVSFNNNNNVQDSRNNSSADDRDPLPEKDSNHSQSNA* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2579 355 MobiDBLite consensus disorder prediction 323 355 - -
Psa6g2579 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 259 IPR005175 -
Psa6g2579 355 MobiDBLite consensus disorder prediction 54 76 - -
Psa6g2579 355 CDD DUF296 148 259 IPR005175 -
Psa6g2579 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 263 - -
Psa6g2579 355 ProSiteProfiles PPC domain profile profile. 142 284 IPR005175 -
Psa6g2579 355 Gene3D - 146 283 - -
Psa6g2579 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 15 343 IPR039605 GO:0003680
Psa6g2579 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 15 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2579 Psa-Chr6 192524787 192530105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2579 53 272 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 60.619 4.10e-79 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2579 - - gmx:100776862 405.986