Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2563 ATGGAGAAAAAGTTAGTAGTGAAATATAAAGAGTGTCTCAAAAACCATGCAGCTGCAATTGGTGGCAATGCGACTGATGGATGTGGTGAGTTCATGGCTAGTGGAGATAACGACACACTTGAAGCTCTTAACTGTTGTGCTTGTGATTGCCACAGAAACTTCCACCGAAAAGAAATAGTGTATGATTCTCAAAATTATGCTCTTTCATTGATTCCTGATCATAACATTAATGCACCCTTCTTGGCTCATTTATCTCCAATCAAAAGTGAATCAAATAGTCCTTCTGATCAGTCTTACTATGAGAAAGATTGTATAAAGGAGGTGGAAAATCGAACCGAAAAGATGATTAAGAAGAGGTGTAGAACCAAGTTTACTAAAGAACAGAAGGAGAAGATGTTGTGTTTTGCAGAAAAAGCTGAGTGGAAGATACAGAAGCTAGAAGAATCTGTGGTGCAGATGTTTTGTCAAGAGATTGGAATCAAGAGAAGAATACTCAAAGTGTGGATGCACAATAATAAGAACACTTTTGCCAAGAGAAATGTTTCTAGTATTATTTAA 558 0.3674 MEKKLVVKYKECLKNHAAAIGGNATDGCGEFMASGDNDTLEALNCCACDCHRNFHRKEIVYDSQNYALSLIPDHNINAPFLAHLSPIKSESNSPSDQSYYEKDCIKEVENRTEKMIKKRCRTKFTKEQKEKMLCFAEKAEWKIQKLEESVVQMFCQEIGIKRRILKVWMHNNKNTFAKRNVSSII* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2563 185 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 117 174 IPR006455 -
Psa6g2563 185 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 8 59 IPR006456 -
Psa6g2563 185 Pfam ZF-HD protein dimerisation region 7 59 IPR006456 -
Psa6g2563 185 Gene3D - 105 178 - -
Psa6g2563 185 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 9 58 IPR006456 -
Psa6g2563 185 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 2 180 - -
Psa6g2563 185 SUPERFAMILY Homeodomain-like 114 178 IPR009057 -
Psa6g2563 185 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2563 Psa-Chr6 190968039 190968596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2563 3 180 ZF-HD Transcription Factor Family AT1G14440 49.495 5.78e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa6g2563 ZF-HD_dimer 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2563 - - gmx:100793926 252.292