Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2560 ATGGCCACCAGACGTTTGAGGGCATTTAAGCGGTGGATGAAATCCAATGGATTCGAATGGAGTAATGCATTGGAATTTGTAGACACCCCTGAACAAGGAATTGCTGTTAAAGCATTGTGTCAAATGAATGAAGGCGATGTGGTTGCCAAAATGCCAAAGCAAGCTTGTCTTACAATCAAGACTAGTGGTGCAAGTGACATCATTGAAAGTGCTTGTTTGGGTGGTTATTTGGGTCTAGCTGTTGCTATCATGTATGAGAGAAGTTTGGGTGAGGATTCTACTTGGGCTGGTTACCTTCAGCTTTTGCCTCAACAAGAATCTTTGCCTTTGGTTTGGACTCTTGATGAAGTAAGCCACCTTTTGTGTGGTACTGAGCTTCAACAGACAGTGCAAGAAGACAAAGCTCTTGTGTATGAGGACTGGAAAGAGAATATTCTACCTCTTTTGGATTCAGAACCTTCAAGGCTTAACCCGGCATTCTTCAGTGTGGAACAGTACTTTGCAGCCAAAAGTCTTATTTCTTCTAGATCTTTCGAGATAGATGATTACCATGGCTTTGGCATGGTCCCCCTAGCAGATCTATTCAATCATAAAACGGGTGCGGAAGATGTGCATTTCACCGCTTTGTCTTCTAATGATGAGTCTGAGGACGATGCTGACGACGGAATTGTTGATGAAGAAGCATTAGCTCAAAATTCATCTATGGATAAGACTGAGAACGGTGTTGTTAGTGACACAGAGTGTTCTTCGGTTACTGAAGATGATACTTCAATGCTGGAGATGGTTATGATAAAAGATGTTAGCACTGGAACTGAGGTATTTAATACTTACGGCTTATTGGGTAATGCCGCTTTGCTACATAGATATGGATTTACCGAACAAGATAACACCTATGATATCGTAAACATTGATATGGAGCTGGTACTTGAATGGTGTTCTTCTCTATTCTCTGACCGCCACAGCAGATCAAGAATCTCCCTTTGGAGAAGGTTAGGCTATTCCGGTGACAGCGAAAACTCAGAATATTTTGAGATATCATTTGATGGAGAACCACAGATTGAACTCATCATTTTATTGCACATCATATTTTTACCAGATGATGTCTACCATAAATTAGACTTATCAGTAGCAGTTACTGGAAATCGTCACGAATCAAGTGAAAAAACCACTTTTTTGAATGGTGATATTTTTCCACATAGTAATGAGAGTAATATGAGCAAGAAACCATTGATGACGAAAGAAATTTGCACGGCTCTGTTGTCACTGGCTGATATAAGGGAGAGTCTCTATGGTTTGAAATCAATAGAAGATGATATGGAGGAGTTGAAAAAGTGTAGTTTTGTTGGAGATAGAAAGGTGTATCATTCTTTGGTTCTGCGTATCAGTGAAAGGAAGATCATTCAAAAGCTAAGAAATTATGCTTCAAAGTCATGTAAGATTACTAATCCTAGTTCTGCCCGGAAGAAGTTGAAAAGGACAGCATAG 1485 0.3993 MATRRLRAFKRWMKSNGFEWSNALEFVDTPEQGIAVKALCQMNEGDVVAKMPKQACLTIKTSGASDIIESACLGGYLGLAVAIMYERSLGEDSTWAGYLQLLPQQESLPLVWTLDEVSHLLCGTELQQTVQEDKALVYEDWKENILPLLDSEPSRLNPAFFSVEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTALSSNDESEDDADDGIVDEEALAQNSSMDKTENGVVSDTECSSVTEDDTSMLEMVMIKDVSTGTEVFNTYGLLGNAALLHRYGFTEQDNTYDIVNIDMELVLEWCSSLFSDRHSRSRISLWRRLGYSGDSENSEYFEISFDGEPQIELIILLHIIFLPDDVYHKLDLSVAVTGNRHESSEKTTFLNGDIFPHSNESNMSKKPLMTKEICTALLSLADIRESLYGLKSIEDDMEELKKCSFVGDRKVYHSLVLRISERKIIQKLRNYASKSCKITNPSSARKKLKRTA* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2560 494 CDD SET_LSMT 23 292 - -
Psa6g2560 494 MobiDBLite consensus disorder prediction 230 249 - -
Psa6g2560 494 Pfam SET domain 33 278 IPR001214 GO:0005515
Psa6g2560 494 ProSiteProfiles SET domain profile. 22 278 IPR001214 GO:0005515
Psa6g2560 494 Gene3D - 294 474 IPR036464 -
Psa6g2560 494 Gene3D set domain protein methyltransferase, domain 1 2 291 - -
Psa6g2560 494 PANTHER RIBOSOMAL LYSINE N-METHYLTRANSFERASE 3 5 480 - -
Psa6g2560 494 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 288 483 IPR036464 -
Psa6g2560 494 PIRSF RMS1_SET 1 478 IPR011383 GO:0016279|GO:0018026
Psa6g2560 494 MobiDBLite consensus disorder prediction 231 249 - -
Psa6g2560 494 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 480 - -
Psa6g2560 494 SUPERFAMILY SET domain 4 296 IPR046341 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2560 1 492 NAC Transcription Factor Family AT3G56570 53.832 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa6g2560 SET 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2560 K05302 - vra:106769924 704.131