Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2551 ATGGCAACTAGACTCCGATTCGAGAATTCTTGTGAAATTGGCGTCTTCTCAAAACTTACTAATGCCTATTGTTTGGTTGCCATTGGAGCCTCTGAAAGTTTCTACAGTACATTTGAAGCTGAGTTATCGGATGTTATCCCTGTGATCAAGACTTCCATCGGTGGAACTCGTATTGTTGGCCGTCTTTGTATTGGAAACAAGAATGGGCTTCTATTGCCTCATACCACCACAGACCAAGAACTTCAACATTTGAAAAACAGTCTACCGGATCAAGTTCGTGTTCAGCGTATAGAAGAAAAACTATCTGCCCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACGCACACTGATCTCGACAGGGAAACTGAGGAGGTCCTTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTTGCCGGTAATGTTCTTGTGGGAAGTTACTGTGCTTTCTCCAACAAAGGTGGTTTGGTGCACCCTCATACTTCGGTTGAAGACTTGGACGAACTTTCCACACTTCTTCAAGTTCCTTTGGTTGCTGGGACTGTTAATCGCGGTGGTGAAGTAATAGGTGCTGGCATGACAGTAAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAACTCTCAGTCATTGAGCGTGTTTTCAAGCTGACGGATGCCAAGCCTAGTGACGACGTGGAGTGGACGATATGA 714 0.4496 MATRLRFENSCEIGVFSKLTNAYCLVAIGASESFYSTFEAELSDVIPVIKTSIGGTRIVGRLCIGNKNGLLLPHTTTDQELQHLKNSLPDQVRVQRIEEKLSALGNCIACNDHVALTHTDLDRETEEVLADVLGVEVFRQTVAGNVLVGSYCAFSNKGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGGEVIGAGMTVNDWTAFCGSDTTATELSVIERVFKLTDAKPSDDVEWTI* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2551 237 Hamap Translation initiation factor 6 [eif6]. 1 237 IPR002769 GO:0042256|GO:0043022
Psa6g2551 237 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Psa6g2551 237 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Psa6g2551 237 SUPERFAMILY Pentein 1 224 - -
Psa6g2551 237 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Psa6g2551 237 Gene3D - 1 225 - -
Psa6g2551 237 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Psa6g2551 237 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 230 IPR002769 GO:0042256|GO:0043022
Psa6g2551 237 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 223 IPR002769 GO:0042256|GO:0043022
Psa6g2551 237 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2551 Psa-Chr6 190588269 190591049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2551 1 234 Eukaryotic Initiation Factors Gene Family AT3G55620 83.333 2.33e-152 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2551 K03264 - twl:119980415 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g2592 1 221719101 221723464 Psa6g2551 6 190588269 190591049 PCT