Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2546 ATGGTTAACTTGTATTATCAGAGGAATCATTTGGATTTCTTTTTCTGTTTCTTTGATTCTTCAGAGACTCAAATGGATAAGAATATTAAACTCTATATGGTGGTTATTAGTGTGTTGGTTTCATCTCTCAACATTGAAATTCTATTCCAAAATCATGCAATTGAAACTTTTGATATTGTACAGTGGCTTGTACATTTCCTTCTTCTATATTGTGCCATTCAAAATCTTGGTTTTTTCGGAAATCATAATGTCCAACAAGGTTTATCTGAACCACTATTAGATCAAAAATTTGAAACTAATCAAACAGGACTTGGTCATGCTACTTTTCTAAGCAAGTTGGTTTTCTCTTGGATCAATTCTTTACTCATTTTAGGTTACTCAAAGCCACTAGATCTTGATGAAATCCCTTCCCTTGTTTCTGAAGATGAAGCAAACATGGCCTATCAAAAATTTGTTCATGCCTGGGAATCACTTGTTAGAGAGAGAGAAAAGAATAATACAAATAGTTTGGTTCTTTGGTCTATTGTTAGAACTTACTTTGGTGAAAACATGTTAATAGCTTTTTATGGATTAATCAGAACTGTTTCTGTTGCTGTTTCACCTCTCATACTCTATGCTTTTGTTAACTACTCCAATAGAACTGAGCCAGATCTTAGACAAGGTCTTTCCATAGTTGGTTTTTTGATTGTCACCAAACTGTTTGAGTCTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGATCAGGGTTGAAAATGAGGTCAGCTCTGATGGTAGCAGTTTATCGAAAGCAGCTAAAGCTTTCTAGCTCAGCAAGATCACGACATGCGGCTGGAGAAATTGTGAACTACATTTCTGTTGATGCATATAGAATGGGAGAATTTCCCTGGTGGTTTCATATAACATGGACTTCTGCATTGCAACTTGTTCTTTCCATTGGTATCCTTTTTGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTGGTTCCCCTTCTTATATGTGGATTTCTTAATGTGCCATTTGCACGGATCCTACAAAATTGCCAGTCACAGTTTATGATTGCACAGGATGAGCGTCTTCGATCGACTTCAGAGATTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAGTCCAGTCACTACGCGATAAAGAGTTTGTATGGTTGTCTAAGGCACAAATCTTGAAAGCTTCTGGTTCATTTCTTTATTGGATGTCTCCTACTGTTATTTCTGCTGTTGTTTTTCTTGGATGTGCTGTCACCAAGAGTGCACCATTAAATGCTGAAACTATTTTCACAGTTCTTGCAACACTGAGGAACTTGGCAGAGCCTGTTAGAATGGTCCCAGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCCTTCGATCGTCTTAATAACTTTTTGCTCGATGAAGAACTAAACAATGATGGTAGTGAAAGAAAATTCAAGGAGTGTCCGGTTAATGCTGTGGAAGTTCAAGATGGCAACTTCATTTGGGATCCTGAATCTGTGTCTCCAACTTTAGCAGATGTGAATTTAGAAATCAAATGGAGACATAAAATCGCAGTTTGTGGACCAGTTGGAGCTGGGAAATCATCACTTTTGTATGCAATACTTGGAGAGATCCCTAAGATGTCAGGAACGGTTAATGTAGGTGGCACTTTTGCCTATGTTTCCCAATCTTCATGGATTCAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATACGAGAAAGCAATCAAAGCATGTGCTTTAGATAAGGATATCAAAGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGGATAAACATGAGTGGAGGACAAAAACAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATACTATTCAATGAATGTGTCATGACTGCTTTAAGAGAGAAAACTGTCATTCTACTTACTCATCAAGTGGAGTTTCTCTCAGAAGTTGACACTATCTTGGTAAAGTATTTCATTTAG 2097 0.3705 MVNLYYQRNHLDFFFCFFDSSETQMDKNIKLYMVVISVLVSSLNIEILFQNHAIETFDIVQWLVHFLLLYCAIQNLGFFGNHNVQQGLSEPLLDQKFETNQTGLGHATFLSKLVFSWINSLLILGYSKPLDLDEIPSLVSEDEANMAYQKFVHAWESLVREREKNNTNSLVLWSIVRTYFGENMLIAFYGLIRTVSVAVSPLILYAFVNYSNRTEPDLRQGLSIVGFLIVTKLFESLSQRHWFFNSRRSGLKMRSALMVAVYRKQLKLSSSARSRHAAGEIVNYISVDAYRMGEFPWWFHITWTSALQLVLSIGILFGVVGIGALPGLVPLLICGFLNVPFARILQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVQSLRDKEFVWLSKAQILKASGSFLYWMSPTVISAVVFLGCAVTKSAPLNAETIFTVLATLRNLAEPVRMVPEALSIMIQVKVSFDRLNNFLLDEELNNDGSERKFKECPVNAVEVQDGNFIWDPESVSPTLADVNLEIKWRHKIAVCGPVGAGKSSLLYAILGEIPKMSGTVNVGGTFAYVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACALDKDIKDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNECVMTALREKTVILLTHQVEFLSEVDTILVKYFI* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2546 698 Gene3D - 494 696 IPR027417 -
Psa6g2546 698 SMART AAA_5 526 697 IPR003593 -
Psa6g2546 698 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 185 465 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2546 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 694 IPR027417 -
Psa6g2546 698 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 30 694 - -
Psa6g2546 698 Gene3D ABC transporter type 1, transmembrane domain 157 481 IPR036640 GO:0005524|GO:0016021
Psa6g2546 698 CDD ABCC_MRP_domain1 499 694 - -
Psa6g2546 698 Pfam ABC transporter transmembrane region 204 444 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2546 698 SUPERFAMILY ABC transporter transmembrane region 172 479 IPR036640 GO:0005524|GO:0016021
Psa6g2546 698 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 499 698 IPR003439 GO:0005524
Psa6g2546 698 CDD ABC_6TM_ABCC_D1 185 473 IPR044746 GO:0140359
Psa6g2546 698 Pfam ABC transporter 517 651 IPR003439 GO:0005524
Psa6g2546 698 ProSitePatterns ABC transporters family signature. 624 638 IPR017871 GO:0005524
Psa6g2546 698 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 30 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2546 Psa-Chr6 189627512 189630611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2546 499 694 Calmodulin-binding Proteins AT2G36910 27.619 5.82e-16 80.5