Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2537 ATGGCANGAAATGGATATATCCATATATTTCGGACTTATATTTTTTTTCAAATAAAAAAAATGGCAAAATCTATACCAAAAATTGGTTCACGGAAAACTGGACGTATTGGTTCGCGTAAGCATCCTCGTAAAATACTAAAGGGGGTTATTTATATTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATGTACGAGGTCGGGTGATTTCTTGGTCCTCCGCCGGTTCATGTGGATTCAAGGGTACACGAAGGGGGACACCGTTTGCCGCTCAAACCGCAGCGGGAAATGCTATTCAAACAGTAGTCGAGCAAGGCATGCAACGAGCAGAAGTAAGGATAAAGGGTCCGGGTCTAGGAAGAGATGCGGCATTAAGAGCTATTTATAGAAGAGGGATACTATTAAAGGGTACACGAAGGGGGACACCATTTGCCGCTCAAACCGCAGCGGGAAATGCTATTCAAACAGTAGTCGAGCAAGGCATGCAACGAGCTGAAGTAAGGATAAAGGGTCCGGGTCTAGGAAGAGATGCGGCATTAAGAGCTATTTATAGAAGTGGGATACTATTAAAGGTTATACGGGATGTAACCCCTCTGCCACATAATGGATGTCGGGCTCCTAAAGAAAGACGTCAAGCAGATACAATAGGCATTACAATGCGAAGAATTTTGCTCGGGGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAGAAAATACCACATGAATATTCTACCATAGTAGATGTACGAGGTCGGGTGATTTCTTGGTCCTCCGCCGGTTCATGTGGATTCAAGGGTACACGAAGGGGGACACCATTTGCCGCTCAAACCACAGCGGGAAATGCTATTCAAACAGTAGTCGAGCAAGGCATGCAACGAGCAGAAGTAAGGATAAAGGGTCCGGGTCTAGGAAGAGATGCGGCATTAAGAGCTATTTATAGAAGTGGGATACTATTAAAGGCTATACGGGATGTAACCCCTCTGCCACATAATGGATGTCGGGCTCCTAAAAAAAGACGTGTGTAA 1035 0.4435 MAXNGYIHIFRTYIFFQIKKMAKSIPKIGSRKTGRIGSRKHPRKILKGVIYIQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAAQTAAGNAIQTVVEQGMQRAEVRIKGPGLGRDAALRAIYRRGILLKGTRRGTPFAAQTAAGNAIQTVVEQGMQRAEVRIKGPGLGRDAALRAIYRSGILLKVIRDVTPLPHNGCRAPKERRQADTIGITMRRILLGEIEGTCITRAKSEKIPHEYSTIVDVRGRVISWSSAGSCGFKGTRRGTPFAAQTTAGNAIQTVVEQGMQRAEVRIKGPGLGRDAALRAIYRSGILLKAIRDVTPLPHNGCRAPKKRRV* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2537 344 Gene3D Ribosomal protein S11 245 344 IPR036967 GO:0003735|GO:0005840|GO:0006412
Psa6g2537 344 Gene3D Ribosomal protein S11 135 212 IPR036967 GO:0003735|GO:0005840|GO:0006412
Psa6g2537 344 Gene3D Ribosomal protein S11 32 134 IPR036967 GO:0003735|GO:0005840|GO:0006412
Psa6g2537 344 SUPERFAMILY Translational machinery components 248 344 - -
Psa6g2537 344 Hamap 30S ribosomal protein S11 [rpsK]. 19 213 IPR001971 GO:0003735|GO:0005840|GO:0006412
Psa6g2537 344 Pfam Ribosomal protein S11 48 135 IPR001971 GO:0003735|GO:0005840|GO:0006412
Psa6g2537 344 Pfam Ribosomal protein S11 248 343 IPR001971 GO:0003735|GO:0005840|GO:0006412
Psa6g2537 344 SUPERFAMILY Translational machinery components 136 212 - -
Psa6g2537 344 SUPERFAMILY Translational machinery components 44 134 - -
Psa6g2537 344 ProSitePatterns Ribosomal protein S11 signature. 181 203 IPR018102 -
Psa6g2537 344 Hamap 30S ribosomal protein S11 [rpsK]. 209 344 IPR001971 GO:0003735|GO:0005840|GO:0006412
Psa6g2537 344 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 137 212 IPR001971 GO:0003735|GO:0005840|GO:0006412
Psa6g2537 344 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 21 136 IPR001971 GO:0003735|GO:0005840|GO:0006412
Psa6g2537 344 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 247 343 IPR001971 GO:0003735|GO:0005840|GO:0006412
Psa6g2537 344 PANTHER 30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC 137 212 - -
Psa6g2537 344 PANTHER 30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC 247 343 - -
Psa6g2537 344 PANTHER 30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC 21 136 - -
Psa6g2537 344 ProSitePatterns Ribosomal protein S11 signature. 312 334 IPR018102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2537 Psa-Chr6 188967100 188969891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2537 249 334 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 32.632 2.81e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2537 K02948 K03040 psom:113275326 237.654