Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2499 ATGAACTGCTCCATTTCGGGCGAGGTTCCGGAAGAGCCCGTGGTGTCCAAAAGCTCCGGTCTTCTGTTCGAGAAGAGATTAATCGAGAGACACATACAGGATTTTGGGAAGTGTCCAGTTACCGGAGAGCCGCTTACTCTGGACGACATTGTATCTATCAATACAGGCAAGATAGTGAAGCCCAGACCAGTGCAAGCTGCTAGCATCCCTGGCATGCTCGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAACTTCGCATTGGAGCAACAATTGCATACAGCAAGGCAAGAGCTAAGTCATGCTCTATATCAGCACGATGCTGCTTGCCGCGTGATTGCAAGAATTACAAAAGAAAGAGACGAAGCTAGGTCTATACTTGCACAGGCAGAACAGCAGTTCCCTATTTCTACACCAAATGCTGTGACAGCGAATGCCCCAGTTCATAGCAATGGGAAAAGAGCTGCTGATGATGAGGAACTGGCACCTAATGCAAAGAAATTACATCCTGGGATATCTTCTAGCATAATTACTGAGCTAACAGACTGCAATGCTGCTCTTTCACAGCAGAGGAAAAAGAGACAGATTCCTGCGACTTTGGCTCCTGTTGATGCTCTAGAGACATATACCCAGATATCTAGTCACCCCTTTCACAAAACTAACAAACAAGGCATTATATCTCTTGATATCCTTCATTCTAAGGACTTAATTGCAACTGGAGGTATTGATTCAAATGCTGTTATTTTTGACCGTCCATCAGGACAAATATTAGCTACACTCAGCGGCCACTCTAAAAAGGTTACCAGCGTGAAGTTTGTAGGTCAAGGAGAATCTGTAATAACTGGTTCAGCAGATAAGACAGTTCGTTTGTGGCAAGGGTCAGATGATGGTAACTATAACTGCAGACAGATCTTAAGGGATCATTCGGATGAGGTCAAAGCCGTCACCGTCCATGCCACCAATAATTACTTTGTGACTGCATCACTTGACGGCACATGGTGCTTTTATGAACTGTCTTCAGGCACTTGTTTGACTCAGGTTTCGGACTCGTCTCAAGGCTACACATCTGCAGCTTTTCATCCTGATGGTCTTATTCTTGGAACAGGCACTACAGATTCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGCAAATGTTGCCAAGTTTGATGGACATGTGGGGGATGTAACTGCAATATCATTTTCTGAGAATGGATACTACCTTGCGACTGCAGCTAAGGATGGTGTAAAGCTTTGGGATCTACGTAAATTGAAAAACTTCAGGAATTTTGCTCCATATGATGCAGACACTCCAACAAACTCTGTGGAGTTTGACCACAGTGGGTCCTACCTTGCAGTTGCAGGCTCTGATGTAAGGATATACCAAGTGGCAAATGTGAAATCTGAATGGAGCTTGATCAAAACTTTTCCTGATTTATCTGGAACAGGGACATCCACATGTGTAAAATTTGGTCCAGATTCGAAATACTTGGCAGTTGCATCAATGGACCGTAATCTTAGAATATTTGGCCAACCTGATGAAGGTATTCCCGCAGAATCATAA 1569 0.4379 MNCSISGEVPEEPVVSKSSGLLFEKRLIERHIQDFGKCPVTGEPLTLDDIVSINTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARITKERDEARSILAQAEQQFPISTPNAVTANAPVHSNGKRAADDEELAPNAKKLHPGISSSIITELTDCNAALSQQRKKRQIPATLAPVDALETYTQISSHPFHKTNKQGIISLDILHSKDLIATGGIDSNAVIFDRPSGQILATLSGHSKKVTSVKFVGQGESVITGSADKTVRLWQGSDDGNYNCRQILRDHSDEVKAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVSDSSQGYTSAAFHPDGLILGTGTTDSLVKIWDVKSQANVAKFDGHVGDVTAISFSENGYYLATAAKDGVKLWDLRKLKNFRNFAPYDADTPTNSVEFDHSGSYLAVAGSDVRIYQVANVKSEWSLIKTFPDLSGTGTSTCVKFGPDSKYLAVASMDRNLRIFGQPDEGIPAES* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2499 522 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Psa6g2499 522 Gene3D - 201 513 IPR015943 GO:0005515
Psa6g2499 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Psa6g2499 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 390 IPR001680 GO:0005515
Psa6g2499 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Psa6g2499 522 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Psa6g2499 522 CDD RING-Ubox_PRP19 3 53 - -
Psa6g2499 522 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 514 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Psa6g2499 522 SUPERFAMILY WD40 repeat-like 220 511 IPR036322 GO:0005515
Psa6g2499 522 ProSitePatterns Trp-Asp (WD) repeats signature. 368 382 IPR019775 -
Psa6g2499 522 Coils Coil 115 135 - -
Psa6g2499 522 SUPERFAMILY RING/U-box 1 54 - -
Psa6g2499 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 384 - -
Psa6g2499 522 Pfam WD domain, G-beta repeat 488 511 IPR001680 GO:0005515
Psa6g2499 522 Pfam WD domain, G-beta repeat 357 381 IPR001680 GO:0005515
Psa6g2499 522 Pfam WD domain, G-beta repeat 387 422 IPR001680 GO:0005515
Psa6g2499 522 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515
Psa6g2499 522 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Psa6g2499 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Psa6g2499 522 SMART WD40_4 300 339 IPR001680 GO:0005515
Psa6g2499 522 SMART WD40_4 428 464 IPR001680 GO:0005515
Psa6g2499 522 SMART WD40_4 255 294 IPR001680 GO:0005515
Psa6g2499 522 SMART WD40_4 210 252 IPR001680 GO:0005515
Psa6g2499 522 SMART WD40_4 342 381 IPR001680 GO:0005515
Psa6g2499 522 SMART WD40_4 471 512 IPR001680 GO:0005515
Psa6g2499 522 SMART WD40_4 384 422 IPR001680 GO:0005515
Psa6g2499 522 CDD WD40 226 511 - -
Psa6g2499 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Psa6g2499 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 431 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2499 Psa-Chr6 185257893 185266059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2499 1 516 U-box Gene Family AT1G04510 74.374 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2499 K10599 - gmx:100527039 943.34