Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2497 ATGGTGAAAGAGTACCCTGATTTCTTCAAAGTCTTCCTCACAGAGAAAGATTATGAGAGAATGCTTATACCAAATGCTTTTGTTAACTTGCTGCATTCAAAAAAGAGAGTAATCCCGGATTTTATCCTAAGAAATTCCAGGGCTAGAGATTGGCATGTCAAGGCTTTTAGTATCGGTCACGAGCTTTATTTTGATGATGGCTGGAAAAGGTTCAAAGAAGAAAATTCTTTAGAGGATAATGACTACATTGTTTTCACGCATATTGAAAACCATGTATTCGAGTTCAAAATCCTCGAACTATCGTCGATGTGTGAAAAGGAGAATGTAAATGATAAGGAGGAAAAGAATAGCAGACCCTGCAATCGTTGTAAGGTTTCACATCTTACTGATAAAAGAACTTTTTGTTTGTTTTGCATGAGTGAACGTTTACTTGTTGATCTATTTTGTTTTAGGGTGCATTGGAAGCAGCTCTGA 474 0.365 MVKEYPDFFKVFLTEKDYERMLIPNAFVNLLHSKKRVIPDFILRNSRARDWHVKAFSIGHELYFDDGWKRFKEENSLEDNDYIVFTHIENHVFEFKILELSSMCEKENVNDKEEKNSRPCNRCKVSHLTDKRTFCLFCMSERLLVDLFCFRVHWKQL* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2497 157 ProSiteProfiles B3 DNA-binding domain profile. 6 101 IPR003340 GO:0003677
Psa6g2497 157 PANTHER B3 DOMAIN-CONTAINING 3 118 - -
Psa6g2497 157 SUPERFAMILY DNA-binding pseudobarrel domain 5 99 IPR015300 -
Psa6g2497 157 Pfam B3 DNA binding domain 8 96 IPR003340 GO:0003677
Psa6g2497 157 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 3 118 - -
Psa6g2497 157 SMART B3_2 8 101 IPR003340 GO:0003677
Psa6g2497 157 CDD B3_DNA 6 98 IPR003340 GO:0003677
Psa6g2497 157 Gene3D - 2 104 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2497 Psa-Chr6 184968201 184969856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2497 6 114 B3 DNA Binding Superfamily AT3G06160 30.172 1.02e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa6g2497 B3 1.4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2497 - - mtr:MTR_1g046320 165.622