Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2496 ATGGCACCAAGGTGGAAAGGAAAAGATGCAAAGTCGAAAAAGGATGCAGAAGGCGAGGCACTTAAAGAACCCATGTCAAAGATTATATCGCAACTTCACTCTTCTTTACTTCAATCAAATACTTGTGGATTTCTCTCTGATAATTGTGTACACTTAGCAGTGCAGCCTGAACAGCTTGAACTGCTTGATAAAGCGTGCTTTGGTCGACCTGTGAGAATCGTTGAAAATGACGTGTGCTGGTTTCAGTTAACCTTGGAGGAAGCATTCTACCTATGTTACTCCTTGAAATGCCTCAAGATTAATGGTGGTGCTGAATCCGGTCCTTCAAATGATGATGATGAGCTGTGGCGTTACTTCAAGTCCAAGAAAGAAGCATTCCCTTTTTTCTACAAGGCTTATTCTCACCTTCGAATGAAAAACTGGGTAGTCAGGTCAGGGGCTCAGTATGGTGTAGACTTCATTGTCTATCGTCATCATCCGGCTCGAGTGCATTCTGAGTACGGTGTACTTGTTCTATCACATGACAATCATGATGATCTACATGGAAGACTCAGAGTATGGTCTGATGTTCATTGCACTACTCGACTTCTTGGAAGTGTTGCAAAAACTCTACTACTTTTGCATGTTAATAGAAATGGTCACGGTGACGAGTCTTTGTTATGTTTGGCAAACTATACCGTTGAAGAGCGCATGATCTCTAGATGGAGTCCAGAACAATGTCGGGAAAGAAAGGATTACACAATTGGAAGACAGATAGATAAGAATGAGACAGATGATCAAATCATGAGTAACACCATCAATGAGTATCCTAATTTCTTCAAAGTCTTCCTTCCAGAAAAACACTCTGACAGAATGCTTATTCCAGTTGCTTTTGTGAAGCTAATGATTTCAAAACAAAAGGTATTGAGAGATTATATCTTCAGAGATCAAAGAGGAAGAGATTGGAAAGTCAAAGCACGACCTATTGGCGGAAAGCTTTATTTTGATGATGGTTGGAAGCGATTCAAAGATGAAAATTCTTTAGAGCAGAATGACTTCATTGTTTTCACACATATTGAAAACAATGTATTCAAGATTAAAGTTCTTGAACTGTCATCTGGGTGTGAAAAGAATAACGTAATGGATGAGGAGGAAAAGAATGATGATAGTATGGGAGAAGTTGGTGATGGACATGATGATGATGATGATGATGATGATGATGATGATGATGATGATTATGATGATGACGATGAAGATGACGATGAAGATGACGATGAAGTTAGTAGAAATGAATATCAACATTGTAGATTCTGCAAAGCATGGGGCATCGGGAGCAGCTCTACGGTTCGAAAACATGAAACCGATGAAATAGATGCTGAAATGTATATTCAGCCTGGAAATCCCTACTTTTTTGCAAAATACTATCATTACAGACCCAACGAATTGCATATTCCAAAAAAGATTATTAAGGATTTTTGCCTCTGCTTCACAAAACATATCAACATTGTATGTTGCCAATGCAAGGATATTGAAAGCAATGAAATAGCATCCTATCATGAGATGTTGCCAACAATGAGCACAAAACATAGGAAAAAGAGAGGAGAAATACGTACATGGATAAATGGCCGAGTATTTGTGCTAGGATGGGCTGAATTTTGGGCTAAGTGTAAGGTCAAAGAAAATGATAGCTGCTTGTGTGAAATTGTGTTGCATGAGGAGAAAGCAATAGAAATGATAAGGGTGCATGTTGTTAGGAAGGTTGTGAAGGAATGA 1752 0.3881 MAPRWKGKDAKSKKDAEGEALKEPMSKIISQLHSSLLQSNTCGFLSDNCVHLAVQPEQLELLDKACFGRPVRIVENDVCWFQLTLEEAFYLCYSLKCLKINGGAESGPSNDDDELWRYFKSKKEAFPFFYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVLSHDNHDDLHGRLRVWSDVHCTTRLLGSVAKTLLLLHVNRNGHGDESLLCLANYTVEERMISRWSPEQCRERKDYTIGRQIDKNETDDQIMSNTINEYPNFFKVFLPEKHSDRMLIPVAFVKLMISKQKVLRDYIFRDQRGRDWKVKARPIGGKLYFDDGWKRFKDENSLEQNDFIVFTHIENNVFKIKVLELSSGCEKNNVMDEEEKNDDSMGEVGDGHDDDDDDDDDDDDDDYDDDDEDDDEDDDEVSRNEYQHCRFCKAWGIGSSSTVRKHETDEIDAEMYIQPGNPYFFAKYYHYRPNELHIPKKIIKDFCLCFTKHINIVCCQCKDIESNEIASYHEMLPTMSTKHRKKRGEIRTWINGRVFVLGWAEFWAKCKVKENDSCLCEIVLHEEKAIEMIRVHVVRKVVKE* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2496 583 Gene3D - 442 580 IPR015300 -
Psa6g2496 583 SUPERFAMILY tRNA-intron endonuclease catalytic domain-like 126 213 IPR036167 GO:0006388
Psa6g2496 583 Gene3D - 264 368 IPR015300 -
Psa6g2496 583 MobiDBLite consensus disorder prediction 379 420 - -
Psa6g2496 583 MobiDBLite consensus disorder prediction 375 422 - -
Psa6g2496 583 SUPERFAMILY DNA-binding pseudobarrel domain 456 562 IPR015300 -
Psa6g2496 583 SMART B3_2 272 365 IPR003340 GO:0003677
Psa6g2496 583 Gene3D - 125 220 IPR011856 GO:0003676
Psa6g2496 583 ProSiteProfiles B3 DNA-binding domain profile. 270 365 IPR003340 GO:0003677
Psa6g2496 583 PANTHER TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2-1-LIKE 1 245 - -
Psa6g2496 583 Pfam B3 DNA binding domain 272 361 IPR003340 GO:0003677
Psa6g2496 583 PANTHER TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 1 245 IPR006676 GO:0000213|GO:0006388
Psa6g2496 583 CDD B3_DNA 270 362 IPR003340 GO:0003677
Psa6g2496 583 Pfam tRNA intron endonuclease, N-terminal domain 43 102 IPR006678 GO:0000213|GO:0006388
Psa6g2496 583 Pfam tRNA intron endonuclease, catalytic C-terminal domain 129 213 IPR006677 GO:0000213|GO:0006388
Psa6g2496 583 SUPERFAMILY DNA-binding pseudobarrel domain 268 363 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2496 Psa-Chr6 184952375 184955437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2496 270 578 B3 DNA Binding Superfamily AT3G06160 21.646 1.22e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa6g2496 B3 4.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2496 K15322 - mtr:MTR_1g046320 402.905