Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2490 ATGTCACACCCTTCAAACTCATATAAAAACCCTTCTCTTTCTCTCTTTTATTTTCATCATAACCATAAACAAATATTCTCAAACTTCAAGATGGCAAGATCAGATAGTTCAACTTCAACCGAAGAAAGTGATGATCCAGAAGAATCTATAGTAACCAAAAGATCTTATGATTGCACATTTTGCAAAAGAGGTTTCACTAATGCAAGAGCCTTAGGAGGCCATATGAACATTCATAGAAAAGAGAGAACCAATTATAAAGCCAAACAAGGCACACCTAATTCCTCACCTTTTGTTCCAGTTGTTTCAGACCAATCCTCAACATATTATAATTACTGCATTTTGGAGCCTCCTATGAACTATAATGACATGTATCTTCAGCCATCAATAACCAACCCTAGAAATTCTCCACCTACTTTTCAATATGATTTTCTTAACACAAACTCACAATCTTTGTTAGGAAACAATTTGAGTCTCCAAATTGGTTCAGGCCATGACGGTAACGATCATGCTTGGAGAGGAATGGAGAAAGATGGTGAAGGGGTGGACCTAGAGCTTAGGCTTGGTCATGATTCATACTCAAACTACTAA 588 0.3673 MSHPSNSYKNPSLSLFYFHHNHKQIFSNFKMARSDSSTSTEESDDPEESIVTKRSYDCTFCKRGFTNARALGGHMNIHRKERTNYKAKQGTPNSSPFVPVVSDQSSTYYNYCILEPPMNYNDMYLQPSITNPRNSPPTFQYDFLNTNSQSLLGNNLSLQIGSGHDGNDHAWRGMEKDGEGVDLELRLGHDSYSNY* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2490 195 Gene3D Classic Zinc Finger 20 97 - -
Psa6g2490 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Psa6g2490 195 PANTHER OS07G0101800 PROTEIN 34 191 - -
Psa6g2490 195 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Psa6g2490 195 SUPERFAMILY beta-beta-alpha zinc fingers 53 83 IPR036236 -
Psa6g2490 195 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 34 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2490 Psa-Chr6 182538732 182539939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2490 54 189 C2H2 Transcription Factor Family AT4G17810 33.333 4.56e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g2490 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2490 - - mtr:MTR_1g044225 248.825