Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2489 ATGCATAAATCAACATCATCTGGAATTTTGATATTCCTGCTTCTATTGTGTGTATCTGCAACTGCTAATGGATTTCCAAAATGCAACTGTGATGATGACACAAGCTGGTGGACTATTGACAACATTCTCGAGTGCCAGAAAATCGGCGACTTCTTAATCGCTGTTGCGTATTTCTCCATCCCTATTGAGCTTCTTTATTTCATAACTTGCTCAAACATTCCATTCAAATGGGTCCTTTTTCAGTTCCTTGCATTCATAGTCCTTTGTGGAATGACACATTTGTTGAACATTTGGACTTATGGACCCCACACTTTTCAAACCATGGTCACACTAACTGTCTTCAAAGTCCTCACTGCAATCGTTTCATTTGCAACTGCCATAACATTGATTACTTTGATCCCTTTGCTTCTTAAAGTGAAGGTTCGAGAGTTTTTGCTCAGACGTAAGACGAGGGAGCTTGGAATCGAGGTTGGTATGATCACGAAACAGAACGAAGCTGGAATGCATGTAAGAATGCTTACTCAAGAGATTCGAAAATCCCTCGATAGACATAAGATTTTGTATACTACTTTGGTTGAACTGTCGAAAACTTTAGGGTTGCAGAATTGTGCTGTGTGGATGCCTAATGTTGATAAAACTGAAATGAATCTCACTCATGAGTTGAATGGGAGGAATGTTAATTCTTCCATACCGATTACTGATCCGGATGTTGTGAGAGTTAAGGGAGATAATGTTGTTAACATTATTGATTCTGATTCACCGCTTGCGTCTGCGAGTAGTGGGGTTTCTGTTGATGTAGGACCGGTTGCTGCAATCCGAATGCCAATGCTTCGTGTTAGCAATTTCAAAGAAGGAGCGTCGGAAGTAACAGAAACTTGTTACGCGATACTCGTTTTGGTACTTCCTAGTGCCGAGGATAGGTCTTGGAGCAATCAAGAGATGGAGATTATTAAAGTTGTTGCTGATCAGGTAACTGTGGCTGTTTCTCATGCTGCAGTTCTCGAGGAATCGCAGCTCATGAGGGAGAAATTGCAGGAGCAAAATCGAGCATTGCAACAAGAGAAAAGGAAGACTATGATGGCGAGCGAGGCTAGAGCGGCTTTTCAGAAAGTTATGAGTAATGGAATGGGAAGGCCAATGCATTCAGTGATGGGTTTGCTTTCAATGCTGCAAGATGAGAATTTGAAAAATGAACAGAAAGTTCTTGTGGACTCAATGGTAAGGACAAGCAGCGTTGTGTCGAACTTGATGAACGATGCTATGGATAATTCGGATAGGGAGGGTGGAAGTGGAAGATTTTCTTTGGAGATGAAATGCTTTGGGCTGCATAACATGTTAAAAGAAGCAGCTTGCATTGCCAGGTTGAGGTTGATAAGTCTTTGCCTAACTATGTTATCAGAGAAGAGGGTTTTTCAAGTGATTTTGCATATGGTTAGGAGCCTAATAGATGGTAACCACGGTGGAGGTATTCTTGTGTTTCGAGTTTTTGCAGAATTGGGAAGCCGAGGAAGGACCGATCAGGGATATGCAACTTGGAGACCAAGCTCGTCTAGCGGTAATGTACATGTTAGATTTGAGATAGGGATCAGTAGCAACGATTCTGAATCGGAGACCTCAGGGCGGTTTTCAGGTAGGATGCATACGAGTGATCACGCGTTCGAGGAAAAGTTGAGCTTCAGCATTTGCAAGAATATAATTCAGTCAATGAAAGGGAGCATACGGTCGGTACCAAACGCTAGAGGCTTTCCTCAAGTCATGACCCTCTCCCTTCGGTTTCAGCTACGTCGATCAATCGCCGTAACCATCCCCGAACCAGGGGAGAGTTCAGAGTCATCGAGTTCGAATTCTTTGTTCAGAGGTCTGCAAGTTTTGTTGGCTGACACCGACAATGTTAATAGAGCCGTAACACAGAAGTTTCTTCAAAAACTAGGCTGTGTTGTGACATCAGTTTCTTCCGGATTCGAATGCCTCAGTCTTTTCGGACCTGCTGGTGGATCTCCCTTTGAACTCATTCTTTTGGATCTTCACTTGCCGGATATAGACGGATTTGAAGTTACTTTGAGGATCCGGAAGCTTAAAAGCCGCAACAGGCCTATCGTGGTTGCTTTGGCAGCAAGCTTTGAACAAGCTTTGCGGGAAAAATGCATGCATATTGGATTTAATGGAGTTATCAGAAAGCCGATTCTGTTGAAAGCTTTCTCGGACGAACTTCAAAGAATCCTGAAGGGAAACTAG 2235 0.4295 MHKSTSSGILIFLLLLCVSATANGFPKCNCDDDTSWWTIDNILECQKIGDFLIAVAYFSIPIELLYFITCSNIPFKWVLFQFLAFIVLCGMTHLLNIWTYGPHTFQTMVTLTVFKVLTAIVSFATAITLITLIPLLLKVKVREFLLRRKTRELGIEVGMITKQNEAGMHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAVWMPNVDKTEMNLTHELNGRNVNSSIPITDPDVVRVKGDNVVNIIDSDSPLASASSGVSVDVGPVAAIRMPMLRVSNFKEGASEVTETCYAILVLVLPSAEDRSWSNQEMEIIKVVADQVTVAVSHAAVLEESQLMREKLQEQNRALQQEKRKTMMASEARAAFQKVMSNGMGRPMHSVMGLLSMLQDENLKNEQKVLVDSMVRTSSVVSNLMNDAMDNSDREGGSGRFSLEMKCFGLHNMLKEAACIARLRLISLCLTMLSEKRVFQVILHMVRSLIDGNHGGGILVFRVFAELGSRGRTDQGYATWRPSSSSGNVHVRFEIGISSNDSESETSGRFSGRMHTSDHAFEEKLSFSICKNIIQSMKGSIRSVPNARGFPQVMTLSLRFQLRRSIAVTIPEPGESSESSSSNSLFRGLQVLLADTDNVNRAVTQKFLQKLGCVVTSVSSGFECLSLFGPAGGSPFELILLDLHLPDIDGFEVTLRIRKLKSRNRPIVVALAASFEQALREKCMHIGFNGVIRKPILLKAFSDELQRILKGN* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2489 744 Coils Coil 334 361 - -
Psa6g2489 744 Gene3D - 616 743 - -
Psa6g2489 744 SUPERFAMILY GAF domain-like 185 331 - -
Psa6g2489 744 CDD HATPase_ETR2_ERS2-EIN4-like 467 590 - -
Psa6g2489 744 ProSiteProfiles Response regulatory domain profile. 622 741 IPR001789 GO:0000160
Psa6g2489 744 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Psa6g2489 744 SUPERFAMILY CheY-like 618 741 IPR011006 -
Psa6g2489 744 PIRSF Ethylen_sen_hybr_HK 1 744 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Psa6g2489 744 Pfam GAF domain 182 328 IPR003018 GO:0005515
Psa6g2489 744 SMART REC_2 621 737 IPR001789 GO:0000160
Psa6g2489 744 Gene3D - 166 328 IPR029016 -
Psa6g2489 744 Gene3D - 329 427 - -
Psa6g2489 744 SMART gaf_1 182 338 IPR003018 GO:0005515
Psa6g2489 744 PANTHER ETHYLENE RESPONSE SENSOR 2 11 742 - -
Psa6g2489 744 Pfam Response regulator receiver domain 623 730 IPR001789 GO:0000160
Psa6g2489 744 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 11 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2489 Psa-Chr6 182514340 182516979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2489 23 742 Miscellaneous Gene Families AT3G04580 50.467 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa6g2489 GAF 2e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2489 K14509 - gmx:100802948 1000.73