Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2488 ATGGCTCTCACAAACTTTCTTGTTTGTACACATCTCTCACTTGCCGGTTCATGTTCCCACTACTGTTCCGACGCTGAGATAATAGTTAGCAAGAAACAAAAACGTGTGCAACAAGAAACCGATGATGTTGTGGAACCTGAATCTGTTTGCATACATCTATCACTTTCTTGTCACTGCATGGATGAAACACGAATGAGTAAGAAAAGAAAATACGAGCAAGAAGCGAGCAATCTTGATGGTTCTTGGAAGATCAAGAAGGTGCTGGAAATGAGTGATCTTGGAAATAATTCAAGACTTTTGGTGAAGAAAGAATTGGCGAAGGAGTTTGTGATTCCTTTCTTGGCCGGTGGTGCTGAGGCTGCTAAGGAAAAAGAAGGAGTTGAAGTTCAAGTATTGGATATTGATCATAACACTCTCCATTCTCTCAATTTTAAAATATGGACTTCTGCACAAAGTTACGTCTTCACCAAGAAATGGGTCAAAGATTTTGTTCGCAAGAGGAACTTAAAGAAAGGAGATCAAATCGGTCTTCGTTGGAATGCACAGAGCCAACAATTTGAGTTCTCGGTTCTTCAAATCAACAACTACCTTCAAATAAAAATCAAGAGAATGGGAGAAAAAACTCTACCGGCTATGAAACAAAGGAGCGCTTATGGCGGTTTGAGGCGGCGCAGGCGACATGGTAGCGACCGGCCGGATTCACCGGAGCTTGCTTGGTGGCTCACCGGCGGAATGGAAACGACAGCGTCGATCAGAGTTGTGGTTGGATCTGCGCGCGGTGTGCAAGTCATAAGGGGGTGCTTGATCATTAATTGA 816 0.435 MALTNFLVCTHLSLAGSCSHYCSDAEIIVSKKQKRVQQETDDVVEPESVCIHLSLSCHCMDETRMSKKRKYEQEASNLDGSWKIKKVLEMSDLGNNSRLLVKKELAKEFVIPFLAGGAEAAKEKEGVEVQVLDIDHNTLHSLNFKIWTSAQSYVFTKKWVKDFVRKRNLKKGDQIGLRWNAQSQQFEFSVLQINNYLQIKIKRMGEKTLPAMKQRSAYGGLRRRRRHGSDRPDSPELAWWLTGGMETTASIRVVVGSARGVQVIRGCLIIN* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2488 271 SUPERFAMILY DNA-binding pseudobarrel domain 82 191 IPR015300 -
Psa6g2488 271 CDD B3_DNA 82 191 IPR003340 GO:0003677
Psa6g2488 271 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 35 193 - -
Psa6g2488 271 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 35 193 - -
Psa6g2488 271 Gene3D - 79 195 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2488 Psa-Chr6 182455283 182458412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2488 84 175 RAV Transcription Factor Family AT1G51120 35.106 6.73e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2488 - - mtr:MTR_1g046880 137.117