Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2484 ATGTATTGGCGTGGAGTTATGGCTGGCCAAATTGGTCATGGTATCATGGAGGAAGATGTATGGAGAAAAGGACCATGGACTTCTGAGGAAGATAGGTTGCTAATTGAGTATGTTAGGCTGCATGGCGAAGGTAGATGGAACTCCGTTGCTAGACTTACAGGATTGAAAAGGAATGGAAAGAGTTGCAGATTGAGATGGGTGAATTATCTTAGACCAGATCTCAAAAAGAGTCAAATAACATCACAAGAAGAGAACATAATTCTAGAGTTGCATGCTAGATGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTACCGGGAAGAACAGACAATGAGATAAAGAATTACTGGCGGACTCATTTCAAGAAAAAGGCAAAAAATCCGTCCGATTCTGCCGAAAAGGCGAAAAACCGAATCCTTAGGAAGCAGTTATTTCATCAGCAACAACAACAACAGTTAAACCATCAGCAGCAACAACAACTTCAATTCAACATGGACATGAAAGGTCTCATGTCCTTGTTTGAGGAAAATAATAATAATCTTAGACAAGAAATGTTGAACAATATGTGTCCAAACACAAGAGAAGAACAACAAGGAAACTTTATGGTGAATGGAAATTATTGTGTACCAGATTCTTCAGCAGATGATAATTTGTGGGATGGTCTGTGGAATTTGGATGATGTTAATGGAAATTTCAGTAACAAAACTGGTTTATATAATTTGGTTGAGGAGATTTATAATTAA 744 0.3804 MYWRGVMAGQIGHGIMEEDVWRKGPWTSEEDRLLIEYVRLHGEGRWNSVARLTGLKRNGKSCRLRWVNYLRPDLKKSQITSQEENIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKNPSDSAEKAKNRILRKQLFHQQQQQQLNHQQQQQLQFNMDMKGLMSLFEENNNNLRQEMLNNMCPNTREEQQGNFMVNGNYCVPDSSADDNLWDGLWNLDDVNGNFSNKTGLYNLVEEIYN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2484 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Psa6g2484 247 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Psa6g2484 247 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Psa6g2484 247 Gene3D - 80 124 - -
Psa6g2484 247 CDD SANT 80 121 IPR001005 -
Psa6g2484 247 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 236 IPR044676 GO:0003700|GO:0006355|GO:0043565
Psa6g2484 247 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Psa6g2484 247 PANTHER MYB TRANSCRIPTION FACTOR 4 236 - -
Psa6g2484 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Psa6g2484 247 Pfam Myb-like DNA-binding domain 79 120 IPR001005 -
Psa6g2484 247 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Psa6g2484 247 SMART sant 22 72 IPR001005 -
Psa6g2484 247 SMART sant 75 123 IPR001005 -
Psa6g2484 247 Gene3D - 23 76 - -
Psa6g2484 247 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2484 Psa-Chr6 182387455 182388787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2484 16 234 MYB Transcription Factor Family AT4G13480 56.250 9.40e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g2484 Myb_DNA-binding 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2484 K09422 - gmx:100795981 335.109