Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2481 ATGGCTGGTGCAATCACTGCTTCCTCCCCTATCTACCACCACAAACTCTTCAACTTCTCCTTCACCCATTCATCCCTTCCCCACACCCTCAACTTCCCACACAAAACAACAACCATATCCTCAAAACTCCTCTTTCTAAATCCCCAATTATTCAACCCTTCTTCTTCTCTCAAACTCCACCCTCTTCACCCACCTTCATTTTCCTTCCATCAATTCCAACTCACCCAAGAAGAAAATGATCCTGAAACAGAACCTAAAACCCTGCAAAATCCAGACCCAAATTTCTCGCAATCAAAGAGACTCTTCGTTGGTAACTTGCCATTTTCACTGTCTTCTTCCAAATTAGCTCAACTCTTTGGAGAAGCTGGAAATGTTGTGTCTGTAGAGATTGTGTACGATGACATCGCGGATAGAAGCAGAGGATTTGCGTTTGTTACTATGGGGAGCGTGGAGGATGCTGAAGAAGCAATTCGAATGTTCGAGGGCACCAATGTTGGAGGTAGGGTTATTAAGGTAAACTTTCCAGAAGTACCCAAAGTAGGCAAAGGGGTGCAAATGAGCTCAAACTATAGAGGTTATGTAGACAGCCCTCATGTGATCTATGCCGGAAACCTCGGTTGGGATATGACTTCCAAAGATCTTAGACAAGCCTTTGCTAAGCAGCAAGGCTTACTGAGTGCCAAGGTTATCTATGAAAGGAGCAACGGAAAATCTCGCGGATATGGGTTTGTTTCATTCGAAACTGCTGAGGATGTAGAGGCTGCTTTGAATGCTATGAACGGCGTGGAGGTTAAAGGCCGGCCTTTACGACTGAAATTGGCTGTTGATTACAAGAAGCCTTCATCTCCTCTGATAGTTGATCAAATTAAAGGAAGTAATGTTGATAGCTTGGAAATGTTGTTTGGAATAAGCAAATGA 918 0.4368 MAGAITASSPIYHHKLFNFSFTHSSLPHTLNFPHKTTTISSKLLFLNPQLFNPSSSLKLHPLHPPSFSFHQFQLTQEENDPETEPKTLQNPDPNFSQSKRLFVGNLPFSLSSSKLAQLFGEAGNVVSVEIVYDDIADRSRGFAFVTMGSVEDAEEAIRMFEGTNVGGRVIKVNFPEVPKVGKGVQMSSNYRGYVDSPHVIYAGNLGWDMTSKDLRQAFAKQQGLLSAKVIYERSNGKSRGYGFVSFETAEDVEAALNAMNGVEVKGRPLRLKLAVDYKKPSSPLIVDQIKGSNVDSLEMLFGISK* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2481 305 Gene3D - 181 282 IPR012677 -
Psa6g2481 305 Gene3D - 70 180 IPR012677 -
Psa6g2481 305 SMART rrm2_1 100 173 IPR003954 GO:0003676
Psa6g2481 305 SMART rrm2_1 199 272 IPR003954 GO:0003676
Psa6g2481 305 CDD RRM_HP0827_like 100 176 - -
Psa6g2481 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 270 IPR000504 GO:0003723
Psa6g2481 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 171 IPR000504 GO:0003723
Psa6g2481 305 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 284 - -
Psa6g2481 305 SUPERFAMILY RNA-binding domain, RBD 90 177 IPR035979 GO:0003676
Psa6g2481 305 SMART rrm1_1 199 272 IPR000504 GO:0003723
Psa6g2481 305 SMART rrm1_1 100 173 IPR000504 GO:0003723
Psa6g2481 305 MobiDBLite consensus disorder prediction 74 94 - -
Psa6g2481 305 SUPERFAMILY RNA-binding domain, RBD 194 279 IPR035979 GO:0003676
Psa6g2481 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 276 IPR000504 GO:0003723
Psa6g2481 305 PANTHER OS02G0815200 PROTEIN 1 284 - -
Psa6g2481 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 177 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2481 Psa-Chr6 181000929 181003314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2481 200 275 Eukaryotic Initiation Factors Gene Family AT1G49760 31.579 5.58e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2481 - - gmx:100789843 325.479