Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2478 ATGAATGACCTATTCTCTGGCTCTTTCTCCCGGTTCCGCAGCACGGATCAAGTCTCGCCGGACAACCACCACCATGTCATCGAAATATCATCCCCAACAACCGCTCAAAGCGGCGTACACCTCGACAAATTCTTCGAAGAAGTCGAAGCCGTTAAAGAGGAACTCAAGGAACTCGACCGTCTATACGAAAACCTTCGAACCTCCAACGAGAGAAGCAAAACGCTTCACACTGCAAAATCCGTAAAAGACATTCGCTCCAGCATGGATAATGACGTATCTGTTGCTTTGAAGAAAGCTAAACTCGTTAAGGCCCGGCTCGAGGCGCTTGACCGCTCCAACGAGGCTAGTAGGAGTTTGCCTGGCGCTGGACCAGGTTCCTCCTCGGACCGGACTAGAACATCTGTGGTGAGTGGTTTGAGAAAGAAACTGAAGGACTCTATGGATAGTTTTAACAACCTTAGACAGCAAATATCATCCGAATACAGAGAAACCGTGCAACGTAGATACTATACTGTCACCGGAGAGAATCCAGATGACAAAACCGTTGACCTCCTCATTTCCACGGGTGAAAGTGAAACGTTTTTACAAAAAGCGATTCAGCAGCAAGGTAGAGCAAACATCATGGACACAATCCAAGAAATTCAAGAGAGACATGACACAGTGAAAGAGATAGAGAGAAATCTACTGGCACTGCACCAAGTGTTCATGGACATGTCTGTTCTGGTTCAGTCACAAGGTGAACAGTTGGATAATATTGAGAGCCACGTGGCACGTGCTAATTCGTACGTTAGAGGTGGGGTCCAGCAGTTGCATGTTGCTAGGAAGCACCAGAAGAATACCAGAAAGTGGACTTGTATTGCTATCTTGATACTTCTTATTATTATCTTGATCATAGTTTTGCCTATTGTTCTTAAAAAATAA 921 0.4539 MNDLFSGSFSRFRSTDQVSPDNHHHVIEISSPTTAQSGVHLDKFFEEVEAVKEELKELDRLYENLRTSNERSKTLHTAKSVKDIRSSMDNDVSVALKKAKLVKARLEALDRSNEASRSLPGAGPGSSSDRTRTSVVSGLRKKLKDSMDSFNNLRQQISSEYRETVQRRYYTVTGENPDDKTVDLLISTGESETFLQKAIQQQGRANIMDTIQEIQERHDTVKEIERNLLALHQVFMDMSVLVQSQGEQLDNIESHVARANSYVRGGVQQLHVARKHQKNTRKWTCIAILILLIIILIIVLPIVLKK* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2478 306 MobiDBLite consensus disorder prediction 110 137 - -
Psa6g2478 306 Coils Coil 41 71 - -
Psa6g2478 306 SMART SynN_4 36 162 IPR006011 GO:0016020
Psa6g2478 306 CDD SynN 41 198 IPR006011 GO:0016020
Psa6g2478 306 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Psa6g2478 306 SUPERFAMILY t-snare proteins 39 266 IPR010989 GO:0016020|GO:0016192
Psa6g2478 306 Pfam SNARE domain 247 299 IPR000727 -
Psa6g2478 306 Gene3D - 200 304 - -
Psa6g2478 306 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Psa6g2478 306 PANTHER SYNTAXIN 18 301 IPR045242 -
Psa6g2478 306 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 18 301 - -
Psa6g2478 306 SMART tSNARE_6 206 273 IPR000727 -
Psa6g2478 306 CDD SNARE_syntaxin1-like 210 270 - -
Psa6g2478 306 MobiDBLite consensus disorder prediction 119 134 - -
Psa6g2478 306 Gene3D - 39 171 - -
Psa6g2478 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2478 Psa-Chr6 180697418 180699577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2478 29 285 SNARE and Associated Proteins AT3G11820 72.374 6.35e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2478 K08486 - gmx:100808718 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g2478 6 180697418 180699577 Psa6g2478 6 180697418 180699577 ECH