Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2463 ATGGCAGCCGCAAGACCCCTTGTCACCGTCCAGGCACTGGACTCCGACGTGGCCACTGATTCCCCAACCACTCTACCCATTCCCGACGTAATGCGTGCCTCAATCCGCCCTGACATCGTCAATTTCGTCCACTCCAACATATCCAATAACAGTCGCCAACCTTACGCCGTCAGCCGCGGCGCCGGTCACCAAACCTCCGCCGAATCATGGGGAACCGGTCGTGCTGTCTCCCGTATTCCCCGTGTTGCCGGTGGTGGAACTCACCGTGCAGGTCAAGCTGCCTTCGGAAACATGTGTCGCGGTGGTCGTATGTTTGCTCCGACCAGGATCTGGCGCCGATGGCACCGTAAGATCAATGTCAACCAGAAGCGTTATGCAGTCGTTTCGGCCATAGCTGCTTCCGCTGTTCCTTCACTTGTTCTCGCTCGTGGTCACAGGATCGAGGCAGTTCCTGAATTTCCTCTTGTTGTTGGTGATTCCGCCGAAGGAGTTGAGAAAACAAAGGAAGCGATCAAGGTTTTGAAGAAGATCGGAGCTTTTCCCGATGCTGAGAAAGCTAAGGATAGCCATGGAATTCGTCCCGGAAAAGGTAAAATGCGTAACCGTCGATATATTTCTCGTAAAGGACCTTTGATTGTTTACAGTACTGAAGGAGCCAAAGCTGTTAAAGCTTTCAGGAACATTCCTGGTGTTGAAATTGCCAATGTTGAGAGACTTAATCTTTTGAAACTTGCACCTGGTGGACATTTAGGTAGATTTGTTATTTGGACTAAGTCTGCATTCGAGAAACTTGATTCAATTTATGGGTCTTTTGATAAGGGTTCTGAGAAGAAAAAGGGTTATGTTTTACCTAGGGCAAAGATGACTAATTCTGATTTGACTAGGATTATTAACTCTGATGAAGTTCAATCTGTTGTGAGACCTATTAAGAAAGATGTTAAGCGTGCTACTCTTAAGAAGAATCCTCTTAAGAATCTTAATGTTATGCTTAGACTTAATCCTTATGCCAAGACTGCTAAAAGGATGGCTTTACTTGCTGAGGCTGAGCGTCTTAAATCTAAGAAGGAGAAGCTTGATAAGAAGAGGAAGACCATATCTAAGGAGGAAGCTTCTGCCATTAAGGCTGCAGGAAAAGCATGGTACAACACCATGGTTTCAGATTCTGATTACACCGAATTCGACAACTTCTCCAAGTGGTTGGGTGTATCACAGTGA 1215 0.465 MAAARPLVTVQALDSDVATDSPTTLPIPDVMRASIRPDIVNFVHSNISNNSRQPYAVSRGAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRIEAVPEFPLVVGDSAEGVEKTKEAIKVLKKIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYSTEGAKAVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKGSEKKKGYVLPRAKMTNSDLTRIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERLKSKKEKLDKKRKTISKEEASAIKAAGKAWYNTMVSDSDYTEFDNFSKWLGVSQ* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2463 404 PANTHER 60S RIBOSOMAL PROTEIN L4 2 404 IPR045240 -
Psa6g2463 404 Gene3D - 2 307 IPR023574 GO:0003735|GO:0005840|GO:0006412
Psa6g2463 404 Coils Coil 341 371 - -
Psa6g2463 404 ProSitePatterns Ribosomal protein L1e signature. 119 145 IPR013000 -
Psa6g2463 404 Pfam 60S ribosomal protein L4 C-terminal domain 279 351 IPR025755 -
Psa6g2463 404 PANTHER BNAC03G35890D PROTEIN 2 404 - -
Psa6g2463 404 SUPERFAMILY Ribosomal protein L4 22 266 IPR023574 GO:0003735|GO:0005840|GO:0006412
Psa6g2463 404 Pfam Ribosomal protein L4/L1 family 27 265 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2463 Psa-Chr6 179593302 179596242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2463 2 404 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 81.886 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2463 K02930 - gmx:100779764 721.85