Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2459 ATGTTGCAAGATGTTATCCACCCTCCATCACATGATGAACAACTCTCCATTGATCAAATTTCAAGTCCAAATATTAGTGCACAGATTTTTGAACTTTGTGACCCTGATTTGTTCCAAGACTCTCTTCAACAAAATTCTGAAGTTACTTCTACCTCAAATTGTTGTCATCATGAAGAAAACAACCTCAACAACAATAATAACTCTTCATATACCTTAAACAACATTTCACAAGCTTTAGATTTAGATAACAACATCAATAGCAATAGCAACAGTACTACAAGCACAACAAGCAACAATAACACAACAAATAATGCCAATAACAACCTTCCGATCATCTTTGATTCGCAACAAGATATCGACAATGACATATCGGCTTCGATAGACTTCACATCGTCGTCGTCTTTTCTGGTTCCGTCGCTTCTTCCGATCAATACTCATCAAGAACAACAGTTTGATTTCTCTTCGACGCAGCCTCCTCAACATCATCTTCAGCTGTCTACGTGTTCGGTTTTGAAAGGACTGTCTTCGCAGTATCATCAAACGGATAATATTCCGGTTTCGGGTGCTGCGGCGCCGCTTATCGGTGGTTCGTTCGGTTCTGTGTTTGAAGATGATTGCATATCTTCGATTCCTTCTTATTCTCCTTCTTGTTCTTATCTTAGTAATGGGTTAGGTGTGTATATGCCGCATGGAAATTTGTCTGCTGATAGTTCTGGATTGTTTGGTGGAGGAATTCTATTAGGTTCTGAAATGCAGACTCAAGATTTGGATTATCAAGGTGAAAATGGTGGAATTTATTGTACAGATTCTGTTCAGCAGGTGTTTAATCCACAAGATTTTCAGGCACTTGGTACTGAGAATCAAAAACTAGTAGCTGGAAATTCTGCCACTTTATCACAAGAAATCTCACATTTGGAAGACTCTACCTTAAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAGAAGATTCATAGATATATGAAGAAGAGAAATGAAAGAAATTTCAGCAAGAAAATCAAGTATGCTTGCCGGAAAACTTTAGCCGATAGCCGGCCACGAGTTAGAGGAAGATAG 1077 0.3853 MLQDVIHPPSHDEQLSIDQISSPNISAQIFELCDPDLFQDSLQQNSEVTSTSNCCHHEENNLNNNNNSSYTLNNISQALDLDNNINSNSNSTTSTTSNNNTTNNANNNLPIIFDSQQDIDNDISASIDFTSSSSFLVPSLLPINTHQEQQFDFSSTQPPQHHLQLSTCSVLKGLSSQYHQTDNIPVSGAAAPLIGGSFGSVFEDDCISSIPSYSPSCSYLSNGLGVYMPHGNLSADSSGLFGGGILLGSEMQTQDLDYQGENGGIYCTDSVQQVFNPQDFQALGTENQKLVAGNSATLSQEISHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGR* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2459 358 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 17 358 - -
Psa6g2459 358 ProSiteProfiles CCT domain profile. 320 358 IPR010402 GO:0005515
Psa6g2459 358 PANTHER CCT MOTIF FAMILY PROTEIN 17 358 - -
Psa6g2459 358 Pfam CCT motif 320 358 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2459 Psa-Chr6 179347411 179352245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2459 303 358 C2C2-CO-like Transcription Factor Family AT5G24930 39.286 2.82e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa6g2459 CCT 9.7e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2459 - - gmx:100807304 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g2459 6 179347411 179352245 Psa6g2459 6 179347411 179352245 ECH