Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2458 ATGGCTCTCACAAACTTTCTTGTTTGTACACATCTCTCACTTGCCGGTTCATGTTCCCACTACTGTTCCGACGCTGAGATAATAGTTAGCAAGAAACAAAAACGTGTGCAACAAGAAACCGATGATGTTGTGGAACCTGAATCTGTTTGCATACACCTATCACTTTCTTGTCACTGCATGGATGAAACACGAATGAGTAAGAAAAGAAAATACGAGCAAGAAGCGAGCAATCTTGATGGTTCTTGGAAGATCAAGAAGGTGCTGGAAATGAGTGATCTTGGAAATAATTCAAGACTTTTGGTGAAGAAAGAATTGGCGAAGGAGTTTGTGATTCCTTTCTTGGCCGGTGGTGCTGAGGCTGCTAAGGAAAAAGAAGGAGTTGAAGTTCAAGTATTGGATATTGATCATAACACTCTCCATTCTCTCAATTTTAAAATATGGACTTCTGCACAAAGTTACGTCTTCACCAAGAAATGGGTCAAAGATTTTGTTCGCAAGAGGAACTTAAAGAAAGGAGATCAAATCGGTCTTCGTTGGAATGCACAGAGCCAACAATTTGAGTTCTCGTTCTTTGACCCCATGTCCTTGGTNTTTGTGATTCCTTTCTTGGCCGGTGGTGCTGAGGCTGCTAAGGAAAAAGAAGGAGTTGAAGTTCAAGTATTGGATATTGATCATAACACTCTCCATTCTCTCAATTTTAAAATATGGACTTCTGCACAAAGTTACGTCTTCACCAAGAAATGGGTCAAAGATTTTGTTCGCAAGAGGAACTTAAAGAAAGGAGATCAAATCGGTCTTCGTTGGAATGCACAGAGCCAACAATTTGAGTTCTCGGTTCTTCGTAGGTGTTAG 852 0.4049 MALTNFLVCTHLSLAGSCSHYCSDAEIIVSKKQKRVQQETDDVVEPESVCIHLSLSCHCMDETRMSKKRKYEQEASNLDGSWKIKKVLEMSDLGNNSRLLVKKELAKEFVIPFLAGGAEAAKEKEGVEVQVLDIDHNTLHSLNFKIWTSAQSYVFTKKWVKDFVRKRNLKKGDQIGLRWNAQSQQFEFSFFDPMSLVFVIPFLAGGAEAAKEKEGVEVQVLDIDHNTLHSLNFKIWTSAQSYVFTKKWVKDFVRKRNLKKGDQIGLRWNAQSQQFEFSVLRRC* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2458 283 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 35 190 - -
Psa6g2458 283 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 198 282 - -
Psa6g2458 283 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 35 190 - -
Psa6g2458 283 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 198 282 - -
Psa6g2458 283 CDD B3_DNA 82 192 IPR003340 GO:0003677
Psa6g2458 283 Gene3D - 191 281 IPR015300 -
Psa6g2458 283 Gene3D - 79 190 IPR015300 -
Psa6g2458 283 SUPERFAMILY DNA-binding pseudobarrel domain 211 280 IPR015300 -
Psa6g2458 283 SUPERFAMILY DNA-binding pseudobarrel domain 82 190 IPR015300 -
Psa6g2458 283 CDD B3_DNA 212 281 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2458 Psa-Chr6 179232634 179234313 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2458 84 175 RAV Transcription Factor Family AT1G51120 35.106 1.24e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2458 - - mtr:MTR_1g046880 133.65