Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2428 CAAGTTGCAAGAAGAAGTTGCAAGAATCAGTCAATTGCGTTCTCAATTCTGGCTAATCCGTGGTGGGCCGATCAACAGGTAGGATTGTCTGGGGTGGTGGATCATCACCACCACCCATCAGACAATTCACCTGGTGTAAACAAACGCCACCACGCGGAACTTTTCATCAATGAAACCAAAAGAAGAGAATTAGACGAAGATGAAGAAAGAGACGACGACGAACCAAAAGAAGGTGCTGTCGAAATCGGAAACAGAAGACCGAGAGGAAGACCACCAGGTTCAAAAAACAAACCAAAACCACCTATCTTTATAACAAGAGACAGTCCAAATTCACTAAAAAGCCATGTGATGGAAGTATCCTCCGGAGCCGATGTAGCCGAGAGCGTAGCTCAGTTTGCAAGAAGGCGACAGCGCGGAGTTTGTGTCTTGAGCGGCAGCGGATCAGTAGCAAATGTTACCCTCAGACAACCAGCAGCACCAGGAGCTGTTGTAGCACTTCATGGAAGGTTCGAGATTCTATCGTTAACCGGAGCTTTTCTACCAGGTCCGGCTCCTCCCGGTGCTACCGGACTCACAGTTTACTTAGCTGGTGGACAAGGGCAGGTTGTTGGCGGAAGTGTTGTTGGATCTTTGATTGCTGCTGGACCTGTTATAGTTATCGCCGCTACTTTTGCTAATGCTACTTACGAGAGATTACCACTTGAGGAGGAAGAAGACGATGACGGAGGCGGGATTCACGGAGGACATCATGTTGGTGGTAATAATAATAACTCATCTCCTCCAGGAATTGGAAGCGGCGGCGGCAGTGGCGGTGGTGTGGGACATATGCAGTCTGGCCTTCCAGATCCATCTTCTTTGCCTTTGTATAACCTGCCACCAAATCTTCTCCCTAATGGTGGCCATGTGGGACATGAAGCTTTTCCATGGCCTCATGGAATTAGGCCACCATACTGA 954 0.4874 QVARRSCKNQSIAFSILANPWWADQQVGLSGVVDHHHHPSDNSPGVNKRHHAELFINETKRRELDEDEERDDDEPKEGAVEIGNRRPRGRPPGSKNKPKPPIFITRDSPNSLKSHVMEVSSGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGSLIAAGPVIVIAATFANATYERLPLEEEEDDDGGGIHGGHHVGGNNNNSSPPGIGSGGGSGGGVGHMQSGLPDPSSLPLYNLPPNLLPNGGHVGHEAFPWPHGIRPPY* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2428 317 ProSiteProfiles PPC domain profile profile. 109 246 IPR005175 -
Psa6g2428 317 CDD DUF296 113 196 IPR005175 -
Psa6g2428 317 Gene3D - 113 240 - -
Psa6g2428 317 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 59 317 - -
Psa6g2428 317 Pfam Plants and Prokaryotes Conserved (PCC) domain 114 225 IPR005175 -
Psa6g2428 317 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 59 317 IPR014476 GO:0003680
Psa6g2428 317 SUPERFAMILY AF0104/ALDC/Ptd012-like 109 237 - -
Psa6g2428 317 MobiDBLite consensus disorder prediction 57 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2428 Psa-Chr6 177943657 177944737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2428 17 317 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 60.129 1.94e-103 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2428 - - mesc:110601522 298.516