Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2419 ATGATAAATTCACAACATTCAACCTATCCTATAGAATCTAACATGTATTTCATAACCAACAAAAACTTGATACATCATGTTTCAAACCCACCATTATTTTTGCCCAAAGCTTTTCCACCAATCCAACATAATAATCCAAATTCCGTTACAAATTTTCCGATGGTAGCAATCGTTATGATAGGAATGATGGCCACATCTCTCTTGTTTATGGCCTACTATACTCTTGTTATCAAATGTTGTCTCGATTGGAATAGTCTTGATCTTGTGAGAGTAAGAGGTTTTTCATTTTCAAGACAAAATGATCAAAATCAATCTTCATCGTATTCAATGACATCGGAGCCAAGAGGGTTAGAACAAGTAGTGATTAATTCGATTCCGATTATTCGCTACAAAGAAGAAAAGGAATATGGTGATGATGAAAGAGTTTCTTGTGAATGTGCTTTTTGTTTGAATGAGTTTGAACATGATGAGAAACTTAGAGCTATACCTAATTGTAACCATTTATTTCATATTGATTGTGTTGATGTTTGGCTTCAAAGCAATGCAAATTGTCCACTTTGTAGAAGAAGAGTTTCTTTGACAAGAGAAATCCATGTTGAAAACGTTGAAAACATCATTGGTGATTGTGAAGAATTTGTTGTGATTGATTTGGATCAAGATCATGAAGATCATGATGATAATGAAGGACAAAACTTGCATGGAAGAAGACATGAAAGAGGTAAAGAATTGGTGGTGTCTCCAAGAGATTTAATTAGTTCTAATTCACACAAGAAGGCTAATAAACTTCAAAAAGTGAGTAGTATGAAGGATGAGGGTATAATTGGTATTAAAGACAAAGATGATGGTTTTCTAGTCCAACCAATTAGAAGGTCTTTTTCAATGGACTTATCCATTGAAGTTTGTGGTGATAGTAGAGATAGAGCTAAGAGATCAAGAGGTGTTGTCTTACCTATTCATTTGGATCCTTGA 969 0.3385 MINSQHSTYPIESNMYFITNKNLIHHVSNPPLFLPKAFPPIQHNNPNSVTNFPMVAIVMIGMMATSLLFMAYYTLVIKCCLDWNSLDLVRVRGFSFSRQNDQNQSSSYSMTSEPRGLEQVVINSIPIIRYKEEKEYGDDERVSCECAFCLNEFEHDEKLRAIPNCNHLFHIDCVDVWLQSNANCPLCRRRVSLTREIHVENVENIIGDCEEFVVIDLDQDHEDHDDNEGQNLHGRRHERGKELVVSPRDLISSNSHKKANKLQKVSSMKDEGIIGIKDKDDGFLVQPIRRSFSMDLSIEVCGDSRDRAKRSRGVVLPIHLDP* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2419 322 PANTHER RING-H2 FINGER PROTEIN ATL16 39 298 IPR044600 GO:0016567|GO:0016740
Psa6g2419 322 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Psa6g2419 322 Pfam Ring finger domain 145 188 IPR001841 -
Psa6g2419 322 SUPERFAMILY RING/U-box 121 194 - -
Psa6g2419 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 193 IPR013083 -
Psa6g2419 322 PANTHER RING-H2 FINGER PROTEIN ATL16 39 298 - -
Psa6g2419 322 SMART ring_2 146 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2419 Psa-Chr6 177452926 177454551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2419 47 299 C3H Transcription Factor Family AT1G04360 38.194 7.83e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2419 - - mtr:MTR_1g043410 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1370 3 122894020 122894988 Psa6g2419 6 177452926 177454551 PCT