Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2415 ATGGTTAGAGCTCCATGTTGCGAAAAGAAGGGATTGAAGAAAGGTCCATGGAGCTTAGAGGAAGATGAAATCCTCACATCTTACATCCAAAAACATGGACATAGTAATTGGCGTGGCACTTCAAACATTCAGAGTTGTAGATTGAGATGGAATAATTATTTAAGTCCTGATATTAAGAGAGGAAACTTTACAAACGAAGAAGAACAAATCATCATTCAGATGCATCACTTGCTAGGGAACAGATGGTCAGCAATAGCAGCAAAGTTACCTGGAAGAACAGACAATGAAATCAAAAATGTATGGCACACACATTTGAAAAAGAGGCTATTGAAAACCAATAATAACCAACCCAATTCAAGTAGCAAAAAAAGAGTATCAAAATCAAAAGTTAAAACATGTGATTCCAATTCCAATTCGAATTCAAGCACTTTAACTCAATCATATGAACGTTCTAATGCTCCTAATTATTTGCTTGAAATGGAAACTACATCATCAAATGGCACATTTTCTAGTGATTATTCATCACAAGAAAAAAATATGGACAATATCATCAATTGTGAAGATCCTGAAGACTCACTTGTGACAATGCTTGAAATTGATGAAAATTTTTGGTCAGAGACAATAACTGATGATGAAATTAGTTCTACCATGCCATCAAATAATGAATTACCAAATCAACAACACCCTTTTAATAATATAGTGGAAAATTTCCAAAATTCTTTTGAGGATGATGATGGCATGGATTTTTGGTATGACTTGTTCATTAGATCTGGGGAATCAGCAGAATTGCCAGAGTTCTAA 801 0.3408 MVRAPCCEKKGLKKGPWSLEEDEILTSYIQKHGHSNWRGTSNIQSCRLRWNNYLSPDIKRGNFTNEEEQIIIQMHHLLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLKTNNNQPNSSSKKRVSKSKVKTCDSNSNSNSSTLTQSYERSNAPNYLLEMETTSSNGTFSSDYSSQEKNMDNIINCEDPEDSLVTMLEIDENFWSETITDDEISSTMPSNNELPNQQHPFNNIVENFQNSFEDDDGMDFWYDLFIRSGESAELPEF* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2415 266 SMART sant 59 107 IPR001005 -
Psa6g2415 266 SMART sant 13 56 IPR001005 -
Psa6g2415 266 CDD SANT 16 54 IPR001005 -
Psa6g2415 266 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 257 - -
Psa6g2415 266 ProSiteProfiles Myb-like domain profile. 9 54 IPR001005 -
Psa6g2415 266 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 257 - -
Psa6g2415 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 54 IPR017930 -
Psa6g2415 266 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Psa6g2415 266 MobiDBLite consensus disorder prediction 131 150 - -
Psa6g2415 266 Gene3D - 6 59 - -
Psa6g2415 266 MobiDBLite consensus disorder prediction 108 150 - -
Psa6g2415 266 SUPERFAMILY Homeodomain-like 11 101 IPR009057 -
Psa6g2415 266 Pfam Myb-like DNA-binding domain 14 54 IPR001005 -
Psa6g2415 266 Pfam Myb-like DNA-binding domain 60 105 IPR001005 -
Psa6g2415 266 Gene3D - 62 137 - -
Psa6g2415 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Psa6g2415 266 CDD SANT 62 105 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2415 Psa-Chr6 176904213 176905404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2415 1 266 MYB Transcription Factor Family AT2G31180 42.403 5.49e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g2415 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2415 K09422 - gmx:100794205 299.286