Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2404 ATGGCAGATCCTGATAGTTATGGGAATCCTGAACGTGATATTGAACAAGCATTCCTTACTTTAAAAAGAGGGACTCAGTTAGTTAAGTATAGTCGAAAAGGGAAGCCAAAACTTTGTAATTTCAGGCTTTCGCAGGATGAAACATCACTGATTTGGATTTCTCATGGAAAGGAAAAGAGTCTGAACTTGTCTTCTGTTCTGCGCATCATCTCAGGACAGAGAACGGCCGTCTTTAGAAGATATTTGCGCCCTGAAAAGGATTATCTCTCGTTCTCACTTATTTATAAAAAAGGCGAACGGTCACTTGATCTGATCTGTAAGGATACAGCCGAGGTTGAGGTTTGGCTTTCGGGCCTTAAGGCATTAATTTCTACTGGACAGGTTCGAAGGCGGCACGCTAGAAGTGATTTAACAGATGATAGTTCTGAATTTTTTCTGAGTGGACGTCCTTCTGGTGGATCATTAGAGTCTACTTCAATTGTTTCCAAGAACAGGTTTTCTTTTGAATCAGTTTCTGGTGAATCCACATCGTCGATTAGAGGAAGATCAGATGCAGGGTCAGATCATGCAAGTATGCCAGTAAGGACAAGTGTTGGAGATGGTTCCCGTGTTAGTGTGTCGGGTGTTAGCTATGTTAGTAGTGTAGGATCAGGACAAGATGACATAGAATCTCTAGGCGACGTTTTCATATGGGGAGAGGTTTGGGCCGACGGGAATTCCTCTGACGGGTTAGGGAGTCAAGTCCCTTCCAAGATAGATGTCCTGATTCCTAAGCCATTAGAGTCTAATGTTGTTCTCGATGTTAATCTAATAGAACCTGGTGTAAATCACATTGCTCTAGTAACACGGCAAGGAGAGATTTTTACCTGGGGAGAGGACTTTGGTGGAAGACTTGGACATGGGTTTGATAAAGATTTTGGTAAACCGAATCTTGTCGAGTCCCTAGCAGTTACTAATATGAGTTTTGTTGCATGCGGTGAATATCATACATGTGCGGTATCTACATCTGGGGATTTATACACCTGGGGTGACGGTGCACATAACGCTGGAATTTTAGGCCATGGAACTGATGTTAGCCATTGTATACCGAAGCGTGTCACTGGGAATTTAGAAGGACTTCAGGTTGTATCTATAGCATGTGGCTCATGGCATACAGCATTGATAACTGCCAGCGGGAAACTTTTTACTTTCGGCGATGGAATTCTTGGTGTATTGGGGCATGGAGATAGAGAGAGTGCGTCGTATCCAAAAGAGGTACAGTTATCTAGTGGACATAGGGCTATTCAGGTTGCATGTGGAGTGTGGCACACGGCAGCCATTATAGAGGTCACCGATCAATCAGGTTCAAATCCTTCTTCGGCAAAGAGGATATTCACGTGGGGCGATGGCGATCAATATCGTTTAGGTCATGCTAACAAGGAAACCTACCTTCAACCGACTTGTGTGACTGCACTTGCTGAATATAATTTTCACCAGGTTGCATGTGGGCAAAGTTTGACTGTTGCACTAACCGCGTCCGGTCATGTATTTAGTATGGGAAGCACGGCATACGGTCAACTAGGAAATCCAAACTCTGATGGAAAAATGCCGATTCTAGTAAGAGATAAGTTACAGGGTGAATCTGCTGAGGAAATATCGTGCGGCACTCATCATGTTGCGGTATTGACTTCAAGAAGTGAACTATATACTTGGGGGAGAGGTGCCAATGGAAGATTAGGACATGGAGACATCGAAGATCAGAAAACTCCCACACTGGTGGAAGCCTTGAAAGAAAGGCATGTAAAGAATATTTCATGTGGCGCAAATTTTACGACTTGTATATGCATACATAAATGGGTTTCTGGCAATGACCAATCGGTTTGCTCCGGTTGCAGACAACCATTTGGTTTTACTAGAAAAAGACATAATTGTTATCATTGTGGGTTGGTGTATTGCCATCCTTGTAGTTCGAAAAAAGCCCTTAAAGCAGCATTGGCTCCAACACCTAGCAAACCGCACCGTGTCTGTGACACTTGCCATGCTAAGCTTAAAGGTTCTGATAGTGGTAACAGTTCCAATTACAGTAGAGAAATGACTCGTCCTTCTAGTTCCACTTATGGAAGGGAAAAATACGACAAGGGAGAGGTAAGGACTTCAAGTATTCTCTTGTCTTCCGCCACTGGTCTAGTGAAATACTTTGACATAAGGAGTAATGGGTTTGGAAGTGCAAATGAATTGTCTTCCATGGCCAGAGACGCTCAAGTTCCGTTGCGTTTACAATTGAAAGATGTCATATTTCCTGGCTCATCAAGTCCGATGCAGAATGCTTCGAGGCCTCTTATTATGCAGCAAAGTACTCCCCCAACCCCACCTTCAATGGTTAATTCAAGATCAACCTCTCCGTATTCACGAAGACCGCCAAGCCCGACACGTTCTATCTCCCCTGGCTTTTCAAGAAGCCTTATTGATAATTTAAAGAAGAAAAATGAGAATTTGAATCAAGAAGTCTCAAAGTTGAAAAACCATATTCGAAGTTTAAAGAAAAAAGCTGACATGCAAGATATGAAGATTCACGAGCTTCAGAAAAATATTCAAGAAGCCAATCTATTGGCTGGAGAAGAATCTTCTAAGCATAGAGAGACCAGGGAATTCATCACGTCCATGGCAGATGAGTTGAGGGAAGTGACTGAAAAGTTGCCACCAGAAATTCCTGGAAGTGAAGCCTTGAAACAGATCCATACGCAAGCTCGATGTATTCTAAGAGAAAACGTAGAATTTGACTCTCCCTTCCAATCGAGCTTTGAGTCTGAGCAACAAAGTGCGCCTAATTTATCAGAGTCAGATAGCGAATCTTCAAACCTGCAAAGAATAGAAGGAAATGGTGAAGTTTCTGAGGTTGTTCCATCTATAGATGCGGGAAGTGTTCCGCAAGAAAGCAACCGCTCATATTTATCTAGTACAGGAGCGTTTCCACCAAGCTCGGAAAATAGTTCCAGGTCAGCCGATTCGCACAGGACCGTCCAAGAAGGAGAAACATCGGTCATTGAACAATTCGAACACGGTGTTTATATCACAGTCATAGTACTATCCGATGGTAGCAAAATTTTCAAACGTGTTAGATTCAGTAAGCGAAGATACAATGAGCAACAAGCAGAAGAATGGTGGAACAAAAACAAAGATAGGGTGTATAGAAGATATAGTCCACCAAGTGAAATTACTGGTTCATCTAGCACCCCGTCTCATGGTGAAGGAAATATTGAGACATAA 3246 0.4279 MADPDSYGNPERDIEQAFLTLKRGTQLVKYSRKGKPKLCNFRLSQDETSLIWISHGKEKSLNLSSVLRIISGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDTAEVEVWLSGLKALISTGQVRRRHARSDLTDDSSEFFLSGRPSGGSLESTSIVSKNRFSFESVSGESTSSIRGRSDAGSDHASMPVRTSVGDGSRVSVSGVSYVSSVGSGQDDIESLGDVFIWGEVWADGNSSDGLGSQVPSKIDVLIPKPLESNVVLDVNLIEPGVNHIALVTRQGEIFTWGEDFGGRLGHGFDKDFGKPNLVESLAVTNMSFVACGEYHTCAVSTSGDLYTWGDGAHNAGILGHGTDVSHCIPKRVTGNLEGLQVVSIACGSWHTALITASGKLFTFGDGILGVLGHGDRESASYPKEVQLSSGHRAIQVACGVWHTAAIIEVTDQSGSNPSSAKRIFTWGDGDQYRLGHANKETYLQPTCVTALAEYNFHQVACGQSLTVALTASGHVFSMGSTAYGQLGNPNSDGKMPILVRDKLQGESAEEISCGTHHVAVLTSRSELYTWGRGANGRLGHGDIEDQKTPTLVEALKERHVKNISCGANFTTCICIHKWVSGNDQSVCSGCRQPFGFTRKRHNCYHCGLVYCHPCSSKKALKAALAPTPSKPHRVCDTCHAKLKGSDSGNSSNYSREMTRPSSSTYGREKYDKGEVRTSSILLSSATGLVKYFDIRSNGFGSANELSSMARDAQVPLRLQLKDVIFPGSSSPMQNASRPLIMQQSTPPTPPSMVNSRSTSPYSRRPPSPTRSISPGFSRSLIDNLKKKNENLNQEVSKLKNHIRSLKKKADMQDMKIHELQKNIQEANLLAGEESSKHRETREFITSMADELREVTEKLPPEIPGSEALKQIHTQARCILRENVEFDSPFQSSFESEQQSAPNLSESDSESSNLQRIEGNGEVSEVVPSIDAGSVPQESNRSYLSSTGAFPPSSENSSRSADSHRTVQEGETSVIEQFEHGVYITVIVLSDGSKIFKRVRFSKRRYNEQQAEEWWNKNKDRVYRRYSPPSEITGSSSTPSHGEGNIET* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2404 1081 MobiDBLite consensus disorder prediction 1062 1081 - -
Psa6g2404 1081 MobiDBLite consensus disorder prediction 777 811 - -
Psa6g2404 1081 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1065 - -
Psa6g2404 1081 Gene3D - 452 622 IPR009091 -
Psa6g2404 1081 SMART fyve_4 609 678 IPR000306 GO:0046872
Psa6g2404 1081 PRINTS Chromosome condensation regulator RCC1 signature 203 219 IPR000408 -
Psa6g2404 1081 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Psa6g2404 1081 PRINTS Chromosome condensation regulator RCC1 signature 378 394 IPR000408 -
Psa6g2404 1081 PRINTS Chromosome condensation regulator RCC1 signature 394 408 IPR000408 -
Psa6g2404 1081 PRINTS Chromosome condensation regulator RCC1 signature 496 514 IPR000408 -
Psa6g2404 1081 PRINTS Chromosome condensation regulator RCC1 signature 554 575 IPR000408 -
Psa6g2404 1081 Gene3D - 13 131 IPR011993 -
Psa6g2404 1081 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 391 IPR000408 -
Psa6g2404 1081 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Psa6g2404 1081 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 615 677 IPR017455 -
Psa6g2404 1081 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 336 IPR000408 -
Psa6g2404 1081 CDD PH_PLC_plant-like 12 124 - -
Psa6g2404 1081 SUPERFAMILY FYVE/PHD zinc finger 611 680 IPR011011 -
Psa6g2404 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 678 IPR013083 -
Psa6g2404 1081 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1065 - -
Psa6g2404 1081 MobiDBLite consensus disorder prediction 922 1003 - -
Psa6g2404 1081 CDD FYVE_like_SF 621 673 - -
Psa6g2404 1081 SUPERFAMILY RCC1/BLIP-II 226 612 IPR009091 -
Psa6g2404 1081 Coils Coil 815 856 - -
Psa6g2404 1081 MobiDBLite consensus disorder prediction 1059 1081 - -
Psa6g2404 1081 MobiDBLite consensus disorder prediction 177 201 - -
Psa6g2404 1081 Pfam Transcription factor regulating root and shoot growth via Pin3 1005 1059 IPR013591 -
Psa6g2404 1081 MobiDBLite consensus disorder prediction 680 704 - -
Psa6g2404 1081 Gene3D - 348 450 IPR009091 -
Psa6g2404 1081 Gene3D - 157 347 IPR009091 -
Psa6g2404 1081 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 430 440 IPR000408 -
Psa6g2404 1081 Pfam FYVE zinc finger 611 676 IPR000306 GO:0046872
Psa6g2404 1081 SUPERFAMILY PH domain-like 14 123 - -
Psa6g2404 1081 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 559 610 IPR000408 -
Psa6g2404 1081 MobiDBLite consensus disorder prediction 680 698 - -
Psa6g2404 1081 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 443 IPR000408 -
Psa6g2404 1081 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 455 506 IPR000408 -
Psa6g2404 1081 MobiDBLite consensus disorder prediction 922 952 - -
Psa6g2404 1081 MobiDBLite consensus disorder prediction 966 1003 - -
Psa6g2404 1081 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 507 558 IPR000408 -
Psa6g2404 1081 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 378 388 IPR000408 -
Psa6g2404 1081 Pfam Regulator of chromosome condensation (RCC1) repeat 506 555 IPR000408 -
Psa6g2404 1081 Pfam Regulator of chromosome condensation (RCC1) repeat 560 607 IPR000408 -
Psa6g2404 1081 Pfam Regulator of chromosome condensation (RCC1) repeat 285 333 IPR000408 -
Psa6g2404 1081 Pfam Regulator of chromosome condensation (RCC1) repeat 456 503 IPR000408 -
Psa6g2404 1081 Pfam Regulator of chromosome condensation (RCC1) repeat 391 440 IPR000408 -
Psa6g2404 1081 Pfam Regulator of chromosome condensation (RCC1) repeat 336 388 IPR000408 -
Psa6g2404 1081 ProSiteProfiles BRX domain profile. 1005 1060 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2404 Psa-Chr6 175753921 175760738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2404 1002 1060 Major Intrinsic Protein MIP AT1G31880 35.593 8.36e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2404 - - gmx:100778984 1439.86