Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2387 ATGGGGAAGACAGGTAAATGGTTTAGGAATCTTTTGAAAGGGAAGAAAGACAGAGAAAAGGAGAAGATAGATTGTGGAAATGGAACAGAAAATCCAACTACTCCAATCTCAGCAACACCCAAGGAGAAAAGAAGATGGAGTTTCAGAAGATCATCTGCTTCCAAGGAAGTTCATGTTGCAGAATCAAGTGTCGCTTCTTTGGTGCCATTACAAACTGTCATGGATTCTCAGAGTTATCAGAGGAAGCATGTTATGGATGTTGCCGCTGCTGATGGTGTGATCTTCTTGAGTTCTTGTTCCAATGGAGGAACTAGAAGGAGTATCGAAGTGGCTTCTGCTATTAAAATTCAATCTGTCTTTAGATCTTACTTGGCGAGAAAGGCATTGTGTGCTCTTAGAGGAATAGTGAAGCTGCAAGCACTAGTAAGAGGTCATTTAGTGAGAAAACAAGCAACTGAGACACTAAGATGCATGCAAGCTTTGGTCTTAGCACAAGCAAGAGCTTGTGCTCAAAGGGTTAGAATGTTATCAGAAGAAAAGGCTAATCAAAAGCATACAACCTGCAGAAAAGCCACAGAGGACAGCTTATTCATGCATATGTACAATGAAATGGAAAGAGGCTTAGAAGAGAATATAAAGACAGTGGAGATGGATGTTTGTGAATCCAAAGGTAACTCAAGAAACAGAAACAACACTACAAATCATGAACACCATGGATTCTCTAAACATAGAATTTCAGCATATTATTCACCAAATGGTTCATACTCAAAGAAAGAAAACTACAAATTATCACCAACACCATCCGCACGAACTGATTCAAGTCCAAAAGCATGCAGTGGATATTTCGAGGACGGTTCCTTCAGTACAGCACAGAACAGTCCCTATTACTACTCAGCAGTATCAAGAGCAGATGATTCAAAGCTTCCTTTTTCTTTCACTAGACAATCCTATGAAGAATCCATGACCAATGAATATCCATTTTTTCCAAATTACATGGCTAACACAGAATCATCAAGAGCTAAAGTAAGATCACAGAGTGCACCGAAGCAAAGGCCGGACTCGTACGAGAGGCAACCGAGTCGGCGAAGAGTTTCTGTGGAAGGAAGAAATGTTCCAAGGCCAGTGAGGATGTTGAGATCATCTTCACATGTTGGTGCCACTGCACAAAACTATCAGTATCCATGGTCTATAAAGCTTGATAGATCCGCAGCTTCACTCAATGACAATGAGTGTGAATCTACAAGTACAGTACTAACAAACTCTAACTATTGCAGATCTCTTGTTTCATATAATCCTCATGGACCAAGCTATTGA 1314 0.4033 MGKTGKWFRNLLKGKKDREKEKIDCGNGTENPTTPISATPKEKRRWSFRRSSASKEVHVAESSVASLVPLQTVMDSQSYQRKHVMDVAAADGVIFLSSCSNGGTRRSIEVASAIKIQSVFRSYLARKALCALRGIVKLQALVRGHLVRKQATETLRCMQALVLAQARACAQRVRMLSEEKANQKHTTCRKATEDSLFMHMYNEMERGLEENIKTVEMDVCESKGNSRNRNNTTNHEHHGFSKHRISAYYSPNGSYSKKENYKLSPTPSARTDSSPKACSGYFEDGSFSTAQNSPYYYSAVSRADDSKLPFSFTRQSYEESMTNEYPFFPNYMANTESSRAKVRSQSAPKQRPDSYERQPSRRRVSVEGRNVPRPVRMLRSSSHVGATAQNYQYPWSIKLDRSAASLNDNECESTSTVLTNSNYCRSLVSYNPHGPSY* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2387 437 Pfam IQ calmodulin-binding motif 133 150 IPR000048 GO:0005515
Psa6g2387 437 Pfam IQ calmodulin-binding motif 111 129 IPR000048 GO:0005515
Psa6g2387 437 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
Psa6g2387 437 MobiDBLite consensus disorder prediction 336 353 - -
Psa6g2387 437 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 414 - -
Psa6g2387 437 SMART iq_5 131 152 IPR000048 GO:0005515
Psa6g2387 437 SMART iq_5 108 130 IPR000048 GO:0005515
Psa6g2387 437 Gene3D - 109 163 - -
Psa6g2387 437 MobiDBLite consensus disorder prediction 1 45 - -
Psa6g2387 437 MobiDBLite consensus disorder prediction 336 382 - -
Psa6g2387 437 MobiDBLite consensus disorder prediction 10 26 - -
Psa6g2387 437 ProSiteProfiles IQ motif profile. 133 160 IPR000048 GO:0005515
Psa6g2387 437 Pfam Protein of unknown function (DUF4005) 314 368 IPR025064 -
Psa6g2387 437 PANTHER IQ-DOMAIN 5-RELATED 1 414 - -
Psa6g2387 437 MobiDBLite consensus disorder prediction 223 243 - -
Psa6g2387 437 MobiDBLite consensus disorder prediction 354 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2387 Psa-Chr6 173165206 173168474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2387 1 427 IQD Protein Family AT4G14750 43.886 2.52e-89 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2387 - - gmx:100817667 558.14