Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2384 ATGGGGCTATTTAGGACTGTTGTTAAAGAAGCATGGGAGAAAACATTCTTATTTACAAAGTTCTTATGCTTTTTACATGTTACCGACAATTATCTGGTTGACCCTGTTAAGATCTACGGTCCTAGCATGCTTCCTGTAATCGATTTGAATCCAAGCCTCTTTCTTGGTGAAAGGATAACACCTCAATCTGGTAAAGTTACTCACAGAGATATTGTAGTCTTCCGCTCACCTCAAAACCCTAGAAGAACTGTCACAAAGCGTGTGATTGGATTAGAGGGCGATACCATTACTTACGTCTCTAATCCCGAAAACAACGATAACGATAAGCATGAGACAGCTGTGGTTCCAAAGGGTCACGTTTGGGTACAGGGGGATAACAAATATAATAGCACTGATTCTAGACATTTTGGTCCAATTCCTTATGGCCTTATTGAGAGTAAGATATTCTGGAAGGTATTTCCACTTGAAGATTTTGGATCGTTCTGGAGAAAATGA 495 0.398 MGLFRTVVKEAWEKTFLFTKFLCFLHVTDNYLVDPVKIYGPSMLPVIDLNPSLFLGERITPQSGKVTHRDIVVFRSPQNPRRTVTKRVIGLEGDTITYVSNPENNDNDKHETAVVPKGHVWVQGDNKYNSTDSRHFGPIPYGLIESKIFWKVFPLEDFGSFWRK* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2384 164 Gene3D Umud Fragment, subunit A 29 163 - -
Psa6g2384 164 Pfam Signal peptidase, peptidase S26 20 99 IPR019533 GO:0004252|GO:0006465
Psa6g2384 164 Pfam Signal peptidase, peptidase S26 109 149 IPR019533 GO:0004252|GO:0006465
Psa6g2384 164 ProSitePatterns Signal peptidases I signature 3. 120 133 IPR019758 GO:0004252|GO:0016021
Psa6g2384 164 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 4 163 - -
Psa6g2384 164 PRINTS Bacterial leader peptidase 1 (S26A) family signature 31 47 IPR000223 GO:0006508|GO:0008236|GO:0016020
Psa6g2384 164 PRINTS Bacterial leader peptidase 1 (S26A) family signature 84 96 IPR000223 GO:0006508|GO:0008236|GO:0016020
Psa6g2384 164 PRINTS Bacterial leader peptidase 1 (S26A) family signature 115 134 IPR000223 GO:0006508|GO:0008236|GO:0016020
Psa6g2384 164 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 4 163 - -
Psa6g2384 164 SUPERFAMILY LexA/Signal peptidase 31 162 IPR036286 -
Psa6g2384 164 TIGRFAM sigpep_I_bact: signal peptidase I 18 155 IPR000223 GO:0006508|GO:0008236|GO:0016020
Psa6g2384 164 CDD S26_SPase_I 35 148 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2384 Psa-Chr6 172510383 172512958 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2384 43 161 MADS-box Gene Family AT1G29960 48.739 1.26e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2384 K09647 - gmx:100526949 201.06