Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2382 ATGCCTCTGAGGCAAATGAAAGAGAGTTCAGAACAACACCTTGTGATCAAACCTCATCTGCCAAACACTATGAATCAGGCTAAGAAGGTTACTAAAGCTGTTCAAAATGGTAAAGGTCCACCATTGTTGTCACAAGAACAACATAACCAAACTTCACCACCTCAAGGAAGGAGTGGTGGTGGAAGAAGAAGGAGTAGAAATGGAAGAAAATCTGATCAAGTTGATGTTTTGATGAGACCAAGTTGTAGGCCTTGTACTGCTGTGAAAAATAATGAGAATGGCCATGTTCTTCAAAATGGAAACATAGTCTCTAGTGATATAGAGATGAGTTTTCCTACTTCAAGCAAGTCTTTGAGTTTTGCTCAAAGGCCTGGTTATGGACAAGTTGGTACAAAGTGCATTGTTAAAGCTAACCACTTCTTTGCAGAATTACCAGACAAGGACTTGAATCAGTATGATGTAACTATTACGCCGGAAGTGTCTTCGAAAGCAGTTAACAGATCCATTATAGCAGAACTTGTGAGGCTGTATAAAGAATCAGACCTTGGCACGAGGCTTCCAGCATATGATGGCCGGAAAAGTCTGTACACAGCAGGGGTTCTTCCCTTTTCATGGAGAGAGTTTAAGATTAAGCTTATAGAAGAAGAGGATGGAATTAATGGCCCCAAGAGGGAAAGAGAATACAAAGTGGTGATCAAGTTTGTTGCAAGGGCTAACTTGCATCACTTGGGACAGTTTCTGGCTGGAAAGCGTGCAGATGCTCCACAGGAAGCGATACAAATTCTTGACATTGTACTAAGAGAGCTAGCATCCAAGAGGTTTTGTCCCATTGGGAGGTCGTTTTATTCACCTGATATTAGAACACCACAACGCCTCGGAGAAGGATTGGAGTCGTGGTGTGGATTTTACCAAAGCATAAGACCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCTTCTGCCGCGTTCATTGAACCTCTTCCGGTGGTGGAATTTGTTGGCCAGCTATTAGGAAAAGATGTTCTGTCAAGGCAGTTGTCTGATGCAGATCGCATCAAGATTAAGAAATCCCTTAGAGGAGTTAAAGTTGAAGTGACACATAGAGGGAGTGTGAGACGGAAGTATCGAGTTTCTGGTATAACATCTCAACCAACAAGAGAACTTGTGTTTCCCGTTGATGAGAACTCAACTATGAAATCAGTGGTTGAATACTTTCAAGAGATGTACGGTTTCACTATTAAACATACACACCTTCCTTGCCTTCAAGTTGGTGGGAATCAAAAGAAAGCAAACTATTTACCTATGGAGGCCTGCAAAATCGTCGAGGGACAACGATACACCAAAAGGTTGAATGAAAAGCAAATTACCTCTCTCTTGAAAGTCACTTGCCAGAGACCTCGGGATCGAGAAAATGACATATTGCGGACGGTTCAGCATAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGAATTAAAGTCAGTGAGAAGTTAGCTTCTGTAGAAGCTCGAATTCTCCCTGCTCCTTGGCTTAAATATCACGAGAGTGGCAAAGAAAAAAATTGTTTACCACAAGTTGGCCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACGGTTAGCCGCTGGGCATGCATAAATTTTTCACGAAGTGTGCAAGATAGTGTGGCTCGTACATTTTGTAACGAGCTTGCACAAATGTGTCAAGTATCTGGCATGGTAGTTTCCCATCCTTTCGACTTGTTGTGTTTGAAGTTGATATTACCCGACAACAATGGTTCTCTCTATGGTGATCTCAAGCGTATTTGTGAGACCGACCTTGGTTTAATTTCTCAATGTTGTTTAACAAAGCATGTCTTTAAGATCACGAAGCAGTACTTGGCTAATGTGTCTCTGAAAATCAATGTTAAGATGGGCGGTAGAAACACCGTTCTTGTTGACGCCGTAAGCTGCAGAATACCGTTGGTTAGTGACATACCAACAATAATATTTGGAGCAGATGTTACTCACCCTGAAAATGGGGAAGACTCCAGCCCCTCAATCGCAGCAGTAGTAGCGTCACAAGATTGGCCCGAAGTTACGAAGTATGCAGGTTTAGTTTGTGCTCAACCTCAAAGACAAGAACTTATACAAGATTTGTACAAAACTTGGCACGATCCTGTTCGCGGCGTAGTTAGTGGTGGCATGATCCGAGATTTGTTGGTTTCGTTTAGAAGAGCAACGGGACAGAAGCCACAAAGGATTATATTTTATAGGGATGGTGTAAGTGAAGGACAGTTTTACCAAATTCTACTATACGAGTTGGATGCGATTCGGAAGGTGTACACGCTCCGTATCTGTTGTCCCTCCAGCATATTATGCACATTTAGCAGCTTTTCGAGCACGTTTCTACACAGAGCCAGACCTACAGGAGACTGGCTCGACAGGTGGTCGAGGTTCAAAGACAACACGTGCAGCCGGAGATTGCGGCGTCAAGCCATTGCCGGCCTTGAAGGAAAATGTAAAGAGAGTAATGTTTTATTGTTAGTCTCTGAAGCAGTTTGGAAATGCATGGATGGTGGTACATGGAGCAAGCACTATCCCTCCAATAGTTACTTGTACATTAGTGACTCTTCAGCAATGTTTCTCATAATAGATCCATGGTTATAG 2661 0.4239 MPLRQMKESSEQHLVIKPHLPNTMNQAKKVTKAVQNGKGPPLLSQEQHNQTSPPQGRSGGGRRRSRNGRKSDQVDVLMRPSCRPCTAVKNNENGHVLQNGNIVSSDIEMSFPTSSKSLSFAQRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSKAVNRSIIAELVRLYKESDLGTRLPAYDGRKSLYTAGVLPFSWREFKIKLIEEEDGINGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPQEAIQILDIVLRELASKRFCPIGRSFYSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKSLRGVKVEVTHRGSVRRKYRVSGITSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKHTHLPCLQVGGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILRTVQHNAYDQDPYAKEFGIKVSEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCNELAQMCQVSGMVVSHPFDLLCLKLILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPQRQELIQDLYKTWHDPVRGVVSGGMIRDLLVSFRRATGQKPQRIIFYRDGVSEGQFYQILLYELDAIRKVYTLRICCPSSILCTFSSFSSTFLHRARPTGDWLDRWSRFKDNTCSRRLRRQAIAGLEGKCKESNVLLLVSEAVWKCMDGGTWSKHYPSNSYLYISDSSAMFLIIDPWL* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2382 886 Gene3D - 587 653 - -
Psa6g2382 886 SMART PAZ_2_a_3 332 465 IPR003100 GO:0005515
Psa6g2382 886 CDD PAZ_argonaute_like 327 442 - -
Psa6g2382 886 Gene3D - 507 586 - -
Psa6g2382 886 Pfam PAZ domain 351 459 IPR003100 GO:0005515
Psa6g2382 886 SMART Piwi_a_2 587 829 IPR003165 GO:0003676
Psa6g2382 886 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 588 778 - -
Psa6g2382 886 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 59 578 - -
Psa6g2382 886 ProSiteProfiles Piwi domain profile. 587 777 IPR003165 GO:0003676
Psa6g2382 886 Gene3D paz domain 321 447 - -
Psa6g2382 886 ProSiteProfiles PAZ domain profile. 328 443 IPR003100 GO:0005515
Psa6g2382 886 SMART DUF1785_2 275 327 IPR014811 -
Psa6g2382 886 Pfam Argonaute linker 1 domain 276 325 IPR014811 -
Psa6g2382 886 Pfam Piwi domain 589 779 IPR003165 GO:0003676
Psa6g2382 886 Pfam Mid domain of argonaute 526 580 IPR032473 -
Psa6g2382 886 SUPERFAMILY Ribonuclease H-like 590 779 IPR012337 -
Psa6g2382 886 Pfam Argonaute linker 2 domain 469 515 IPR032472 -
Psa6g2382 886 MobiDBLite consensus disorder prediction 40 58 - -
Psa6g2382 886 Gene3D - 656 793 IPR036397 GO:0003676
Psa6g2382 886 Pfam N-terminal domain of argonaute 132 266 IPR032474 -
Psa6g2382 886 SUPERFAMILY PAZ domain 322 483 IPR036085 GO:0005515
Psa6g2382 886 PANTHER PROTEIN ARGONAUTE 10 588 778 - -
Psa6g2382 886 PANTHER PROTEIN ARGONAUTE 10 59 578 - -
Psa6g2382 886 MobiDBLite consensus disorder prediction 40 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2382 Psa-Chr6 172281946 172288326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2382 1 777 Eukaryotic Initiation Factors Gene Family AT5G43810 76.010 0.0 1229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2382 K11593 - gmx:100816999 1354.35