Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2362 ATGGGGGATTCTTCTTACGGCACGCGTGAATTGCCCACATCCAATGCATTCCCAGAATCACCTATTCCTTCAGAGGTTGGGAAACCACCTAGGCGGGCCAAACGACCAAAGGAAACACTTGAATGGAAGTGTAGTCAGGAAATTATAAATGAAAGTGATGAACTTACCAAGCAGTTAGCGGTCTCAAAGGCTGATTGGAAACCCCAGGACTTGGCACTGAATCAAGTTGCATACGAAGATTCAACCACGCCAGCACCAGTGTGCTCTTGCACCGGCATTCTCAGACAGTGCTACAACTGGGGTAATGGAGGTTGGCAATCTGCTTGTTGTACAACCACTTTATCGGTGTATCCTCTTCCAGCAGTGCCCAACAAAAGGCATGCACGAGTAGGCGGTAGGAAAATGAGTGGAAGTGCTTTTAATAAAATGCTTAGCCGGCTTGCAGCTGAAGGACATGATCTCTCACACCCAGTTGACCTTAAAGACCATTGGGCCAAGCATG 502 0.4801 MGDSSYGTRELPTSNAFPESPIPSEVGKPPRRAKRPKETLEWKCSQEIINESDELTKQLAVSKADWKPQDLALNQVAYEDSTTPAPVCSCTGILRQCYNWGNGGWQSACCTTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKMLSRLAAEGHDLSHPVDLKDHWAKH 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2362 167 PANTHER - 9 167 IPR010409 -
Psa6g2362 167 Pfam GAGA binding protein-like family 5 167 IPR010409 -
Psa6g2362 167 PANTHER PROTEIN BASIC PENTACYSTEINE6 9 167 - -
Psa6g2362 167 MobiDBLite consensus disorder prediction 1 20 - -
Psa6g2362 167 SMART GAGA_bind_2 1 167 IPR010409 -
Psa6g2362 167 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2362 Psa-Chr6 170096903 170097503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2362 1 167 BBR or BPC Transcription factor family AT5G42520 54.774 2.95e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Psa6g2362 GAGA_bind 3.1e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2362 - - mtr:MTR_1g023660 298.516