Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2360 ATGGAATTCAAGGCAACTGAGCTTAGATTGGGGTTACCAGGAATAACAGAGGAAGAGGAGAAGAAAATCATACATGGTAGTAGTGTTGTTAAGAACAACAACAAAAGACAATTACCTCAAACTTCTGAAGAATCTGTTTCAATTTCCAAGGTTACAAACGATGAGCATATTGTGGAAAGTTCTTCTGCAGCCCCTCCTGCAAAAGCAAAGATAGTTGGGTGGCCACCGATTAGATCTTACAGGAAAAACAGTTTGCATGAGGCTGATGTTGGTGGGATCTTTGTGAAAGTGAGCATGGATGGTGCCCCTTACCTTAGAAAGATTGACTTAAGGGTCTATGGAGGGTACTCAGAATTACTCAAAGCTCTAGAAACCATGTTCAAGTTGACCATAGGTGAGTATTCTGAAAGAGAAGGTTATAAGGGATCTGAATATGCACCAACTTATGAAGACAAGGATGGTGATTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCCTGCAAAAGGCTAAGAATCATGAAAGGCACAGAAGCTAAAGGATTGGGTTGTGGTGTATGA 570 0.4105 MEFKATELRLGLPGITEEEEKKIIHGSSVVKNNNKRQLPQTSEESVSISKVTNDEHIVESSSAAPPAKAKIVGWPPIRSYRKNSLHEADVGGIFVKVSMDGAPYLRKIDLRVYGGYSELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEAKGLGCGV* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2360 189 PANTHER AUXIN-INDUCED PROTEIN 1 186 - -
Psa6g2360 189 Pfam AUX/IAA family 6 186 IPR033389 -
Psa6g2360 189 SUPERFAMILY CAD & PB1 domains 89 178 - -
Psa6g2360 189 Gene3D - 86 189 - -
Psa6g2360 189 ProSiteProfiles PB1 domain profile. 92 179 IPR000270 GO:0005515
Psa6g2360 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 186 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2360 Psa-Chr6 169862063 169864357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2360 95 185 B3 DNA Binding Superfamily AT2G46530 38.462 4.63e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa6g2360 AUX_IAA 6e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2360 K14484 - gmx:100800212 288.5