Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2346 ATGGATCCTTTTTTTCCTGAGAATCTTCTTCTAGGTGATGTTTTCTGGGACGAACCTCTTCTTTCAACAACTAATTTCGTTCAAACACAACCTTGTCCTATTCAAAACCCAAGTGCTTTTGTTCAATATAGAGACCAACCCAAGATTAGTTTAGGAAAACAAACTTCTCTGAAAGGGTCCAATTCACATTCCATGAACAAGAGAATGGTTGCATTTTTGAGAAAAAGTTTGCCGTTAGAGAGAAATAAAGCAGCTGAATTTGAAAGAGAACGTGGATTCAAACACATGATCAGTGAAAGAATGAGAAGACAAAGACAGAGACAGTGTTGTTCCAACTTACATTCAGTTTTACCTCATGGAACCAAAACAGATAATAATTCAGTAGTTCAAACAGCAGCTAAGGAAATTCAAAGGCTGCAAGGACGCAAAGAGGAGTTAGAGAGGAAAAACTTTGTGCTCGAAGGAAACATCGAGGGAAGAAAATTCCAGCATTTGAGAGTGACATATTCATCTAAATCTGGAATTGATTCTATAGTTGAGACACTGAAATTGTTGAAAGGACATGGTGTGGATACTAGAAGGGTCAAGACAGATTTTTCTCAGCCGGAGTTTTTTGCAGTCTTGGAGATAGAAACTGAGATTGCAAGAGGTGATGTGGAAGAGGCTGTTAAGAGAACACTTGATGAACTTGAGTGGAAGTTTCGTTCTCATGTCCAAGAAGGTTCTGAAAAGCAAATACTACATCCATTTTAG 753 0.3811 MDPFFPENLLLGDVFWDEPLLSTTNFVQTQPCPIQNPSAFVQYRDQPKISLGKQTSLKGSNSHSMNKRMVAFLRKSLPLERNKAAEFERERGFKHMISERMRRQRQRQCCSNLHSVLPHGTKTDNNSVVQTAAKEIQRLQGRKEELERKNFVLEGNIEGRKFQHLRVTYSSKSGIDSIVETLKLLKGHGVDTRRVKTDFSQPEFFAVLEIETEIARGDVEEAVKRTLDELEWKFRSHVQEGSEKQILHPF* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2346 250 Coils Coil 129 156 - -
Psa6g2346 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 150 IPR036638 GO:0046983
Psa6g2346 250 Pfam Helix-loop-helix DNA-binding domain 95 140 IPR011598 GO:0046983
Psa6g2346 250 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 239 IPR044658 -
Psa6g2346 250 PANTHER TRANSCRIPTION FACTOR BHLH92 1 239 - -
Psa6g2346 250 Gene3D - 79 155 IPR036638 GO:0046983
Psa6g2346 250 SMART finulus 96 145 IPR011598 GO:0046983
Psa6g2346 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 139 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2346 1 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 36.404 1.72e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g2346 HLH 4.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2346 - - gmx:100815874 254.988