Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2339 ATGACTTCTGGTTTTGTACCTTCTCCCTCTTCACCATCACAACCTAACTCATCAACTGAGTTCATTGATGGCTTAAAGTTTGGTCAAAAAATATACTTTGAAGATACAGCACCTCAAACCAAACCTAATGGTCGTTCATCTTCATCTTCTTCTTCATCTATGGGGATTATGATGAAGAAGGGAAGTCATCCCCCTAGGTGTCAAGTTGAAGGTTGTAAAGTAGATCTGAGTGGCGCTAAGGCTTATTATTCTAGACATAAGGTTTGTTGCATGCATTCAAAATCTCCTTCTGTTGTTGTTTCTGGTTTGGATCAGAGGTTTTGCCAACAGTGTAGCAGATTCCATCAGCTGCCTGAATTTGATCAAGGAAAACGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAAAGGCGGAGAAAGCCTCAACCGAGCTCCGTGTTTACCTCGCGCTTTCCCACACTCTCTCCACCTACTTTTGATAACAATGGCAAATGTGATAACTTTCTGATGGAATGTGCTTCATACCAGAACAACTCAATGCTAACTACAAGATCATCCGAGCTGGTACGCGGCGATCAAACAACGCCATTTACATGGCAAAACAACTCATGGATGCCGCCATCCGAGTTTTTTCAGCAAACAACAAACTTCGATGGCGCTAGACATCTTCCAACGGCAAACTACAATGAAGTCACAGATTCGAGCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGTATTCTAGAAACACAACATCACCAAGTGTGGAGATGAACAACTACTTGTTGAATTTCAATGGTTCTTCACTCATGACAAAGCAATCTTCTCAAGGTGCAGCCAGTTTTCAACTTCCAAATGCTGCTTGGTTTTTAAAGGGGGTTGATTCTCGTAACTGTTTGTCGCCCGAACCTGTTCCCGGTCTCGGCCAATATTCACAGGCTATGAATAGCGATCTTCATGGCGAGATCGATATGCCACAAGGCAAGAGGCAATATTACTGGTCACTATAA 1011 0.4332 MTSGFVPSPSSPSQPNSSTEFIDGLKFGQKIYFEDTAPQTKPNGRSSSSSSSSMGIMMKKGSHPPRCQVEGCKVDLSGAKAYYSRHKVCCMHSKSPSVVVSGLDQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQPSSVFTSRFPTLSPPTFDNNGKCDNFLMECASYQNNSMLTTRSSELVRGDQTTPFTWQNNSWMPPSEFFQQTTNFDGARHLPTANYNEVTDSSCALSLLSNQTWYSRNTTSPSVEMNNYLLNFNGSSLMTKQSSQGAASFQLPNAAWFLKGVDSRNCLSPEPVPGLGQYSQAMNSDLHGEIDMPQGKRQYYWSL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2339 336 MobiDBLite consensus disorder prediction 39 57 - -
Psa6g2339 336 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 332 IPR044817 GO:0003677
Psa6g2339 336 MobiDBLite consensus disorder prediction 33 62 - -
Psa6g2339 336 Pfam SBP domain 67 140 IPR004333 GO:0003677
Psa6g2339 336 MobiDBLite consensus disorder prediction 1 20 - -
Psa6g2339 336 Gene3D - 58 128 IPR036893 GO:0003677|GO:0005634
Psa6g2339 336 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 8 332 - -
Psa6g2339 336 MobiDBLite consensus disorder prediction 131 153 - -
Psa6g2339 336 SUPERFAMILY SBT domain 65 146 IPR036893 GO:0003677|GO:0005634
Psa6g2339 336 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2339 Psa-Chr6 168759787 168762113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2339 25 332 SBP-box Gene Family AT2G42200 39.881 3.89e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa6g2339 SBP 5.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2339 - - gmx:100807165 355.14