Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2337 ATGGAAGCAACCTCAACTTGCTTCTTCTGCGGTAGAATCCCATCAAAATCCAAACTTGCTTCATCTTCTTCATTTGGGTCATTCTGTTTATTAACACGTAACAATGTTAATACCATCATGTGCAAAACTTCAATGAAAACCCATAACCGTGTTATTCAAAACGTCACAAACAGTAACGAAACAAAGCTTCCAAGCAGCACAAAAAGAAGAAGAAGGAGAAAAAGAAATGGTGTAGCAGTGGAAGAGCAACCACGACAACAGAGGGAAATTGAAATACAAATACCGAGTGTTTATGTTCATGAGAATACTGGTGACCCAATTGGGTGGAAAGAAGTTGGGAAAAGCGTCGTGAGTTGGATTCGTGAGAGTATGAAAGCCATGGCTTTTGATATTGCTTCTGCTGAGTTAGTTGAAGATTTGGAATTTTCTGAGATGAAACAAAGAATGGGACCTGGTCTTACTTTTGTTATTCAAGCTCAACCTTATTTGAATGCTGTTCCTATGCCTCTTGGACTTGAAGTGATGTGTTTGAAAGCTTGTACTCATTATCCTACTCTCTTTGATCACTTTCAGAGAGAGTTGCGTGATGTTCTTCAAGATATGCAGAGTAAATCGTTGGTTGAGGATTGGCGTGAAACTCAGTCTTGGAAATTGCTTAAGGAACTTGCTAATTCAGCTCAGCACAGGGCAGTGGCGAGGAAGATAACACAGCCGAAGATGGTCCAAGGTGTTTTAGGAATGGACATAGAAAGGGTCAAAGCGATACAGAATAGGATAGACGAATTCACCAACAACATGTCAGAATTGCTCAATATTGAAAGGGATGTTGAATTGGAGTTTACTCAGGAGGAACTGGATGCTGTTCCTAGACCCGATGATGCTTCTGATCCGTCAAAACCAATTGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGTGACACCATTTGTAACTTAAATGCCATCAGTACCTCTACAGGATTGGGGGGAATGCATTTGGTGTTATTCAAGATTGAAGGCAACCACCGATTACCACCTACTACTCTTTCACCTGGAGAAATGGTTTGTGTGAGAACTTGCGACAGCAAGGGCGCAGTTACAACTTCTTGCATGCAAGGAGTTGTGGACAATCTTGGCGATGATGGTTATAGTATTACCGTTTCTCTAGAGCTACGCCATGGTGATTCTTCTTTCTCTAAACTAGTTGGGAAGAATGTGCGCATTGACCGTATTCAAGGACTGGCTGATACACTTACCTACGAGCGCAACTGTGAAGCGCTAATGATGCTTCAGAAAAACGGTTTACGGAAGAAAAATCCATCGATTTCTGTTATTGCAACTCTATTTGGAGATGGGGAAGATGCTGCATGGCTTGAGAAGAAGAATCTGGTTGACTGGGAAGAAGAAAAAATAAATGGAGTATTAGGAAGTGAATCCTTTGATAAATCTCAGCAGAGAGCAATTGCATTGGGTTTGAATAAGAAGAGGCCACTATTGGTTATCCAAGGACCTCCCGGTACAGGCAAGACCGGTTTGCTCAAACAACTTATAGCAAGTGCCGTTGAGCAAGGCGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAATATGGTTGAAAAGCTTTCAAATGCTGGAATAACTATCGTGCGAGTTGGAAACCCAGCCCGTATATCAAAAACAGTAGCGTCAAAGTCTTTGGGAGAAATTGTAAATGGAAAGCTTGCAAGTTTTCGCGAAGAGTACGAGAGGAAGAAGTCTGATCTAAGGAAAGATCTAAGACATTGTTTAAAGGATGATTCATTAGCTGCAGGCATACGGCAACTTCTGAAACAGCTTGGAAAGTCGCTAAAGAAAAAGGAAAAGCTGATGATAAATGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACCAATACCGGAGCAGCTGATCCTTTTATTCGAAAGCTAGATGCTTTTGACTTAGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCGTCATGCTGGATACCTATACTGCAGGCAAAACGATGTATTCTTGCCGGTGATCAATGCCAACTAGCTCCTGTGATATTTTCTAGAAAAGCATTAGAAGGTGGTTTAGGAATATCGCTATTAGAGAGAGCTGCAACTTTGCATGAAGGGATTCTCACTACTAGATTAACGACACAATACCGTATGAATGATGCCATTGCAAGTTGGGCTTCAAAGGAGATGTATGGTGGATTGTTGAAGTCCTCAAAGACTGTTTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTGAAGCCTACATGGATAACACAGTGCCCTCTGCTATTGCTTGACACTCGAATGCCGTACGGAAGTTTATCAATTGGCTGCGAAGAGCATCTAGATCCGGCTGGAACTGGCTCGTTATATAATGAAGGAGAAGCTGATATTGTTTTGCAGCATGTTTTTTCCTTAATTTATGCTGGTGTTAGCCCAAAAGCTATTGTAGTTCAGTCGCCTTATGTTGCTCAAGTTCAACTTTTGAGGGACATGCTTGATGGGGTTCCAGAAGCTGCTGGTACAGAAGTTTCCACAATTGATAGCTTTCAAGGTCGGGAAGCTGATGCTGTAATTCTATCAATGGTACGATCAAACACATTGGGAGCTGTTGGATTCCTCGGCGATAGCAGAAGAATTAATGTTGCCATCACAAGAGCGCGCAAACATTTAGCTGTAGTATGTGACAGCTCAACTATTTGCCACAATACATTCCTAGCAAGGCTGATGCGCCATATCCGACACTTTGGTAGGGTGAAGCATGTAGAGCCAGATAGTTTTGGAGGGTTTGGGCTTGGGATGAATCCAATATTACCTTTTATTGATTAG 2871 0.4201 MEATSTCFFCGRIPSKSKLASSSSFGSFCLLTRNNVNTIMCKTSMKTHNRVIQNVTNSNETKLPSSTKRRRRRKRNGVAVEEQPRQQREIEIQIPSVYVHENTGDPIGWKEVGKSVVSWIRESMKAMAFDIASAELVEDLEFSEMKQRMGPGLTFVIQAQPYLNAVPMPLGLEVMCLKACTHYPTLFDHFQRELRDVLQDMQSKSLVEDWRETQSWKLLKELANSAQHRAVARKITQPKMVQGVLGMDIERVKAIQNRIDEFTNNMSELLNIERDVELEFTQEELDAVPRPDDASDPSKPIEFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKIEGNHRLPPTTLSPGEMVCVRTCDSKGAVTTSCMQGVVDNLGDDGYSITVSLELRHGDSSFSKLVGKNVRIDRIQGLADTLTYERNCEALMMLQKNGLRKKNPSISVIATLFGDGEDAAWLEKKNLVDWEEEKINGVLGSESFDKSQQRAIALGLNKKRPLLVIQGPPGTGKTGLLKQLIASAVEQGERVLVTAPTNAAVDNMVEKLSNAGITIVRVGNPARISKTVASKSLGEIVNGKLASFREEYERKKSDLRKDLRHCLKDDSLAAGIRQLLKQLGKSLKKKEKLMINEVLSSAQVVLATNTGAADPFIRKLDAFDLVVIDEAGQAIEPSCWIPILQAKRCILAGDQCQLAPVIFSRKALEGGLGISLLERAATLHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSKTVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSIGCEEHLDPAGTGSLYNEGEADIVLQHVFSLIYAGVSPKAIVVQSPYVAQVQLLRDMLDGVPEAAGTEVSTIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLAVVCDSSTICHNTFLARLMRHIRHFGRVKHVEPDSFGGFGLGMNPILPFID* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2337 956 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 41 955 - -
Psa6g2337 956 CDD DEXXQc_SMUBP2 481 731 - -
Psa6g2337 956 Pfam AAA domain 708 911 IPR041679 -
Psa6g2337 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 919 IPR027417 -
Psa6g2337 956 MobiDBLite consensus disorder prediction 56 85 - -
Psa6g2337 956 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 41 955 - -
Psa6g2337 956 Coils Coil 252 272 - -
Psa6g2337 956 Gene3D - 730 939 IPR027417 -
Psa6g2337 956 Pfam AAA domain 482 699 IPR041677 GO:0004386
Psa6g2337 956 Gene3D - 310 416 - -
Psa6g2337 956 Gene3D - 417 714 IPR027417 -
Psa6g2337 956 Coils Coil 583 603 - -
Psa6g2337 956 CDD SF1_C_Upf1 732 928 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2337 Psa-Chr6 168515204 168520235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2337 469 671 Core DNA Replication Machinery Family AT1G08840 24.631 2.23e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2337 - - aip:107625008 1482.62