Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2332 ATGTCATGTCTTCTTTTGTTCTCTTATGTGTTTGTTGTAATGGTCACATTACCTCATGCTGCAGCACAAAACGATGACAGCCAAGTAGATGCTCTGTTGAAGTGGAAAGCAAGCCTTGACAACCAAAGCAAGGCGTTGCTCTCTTCATGGATTGGAAATAATCCTTGTGGTTGGGAGGGAATCAGATGTGATAATAACTCTAAATTCATCTACAAGATAAATCTCAACAATATGGGATTAAGAGGTACCCTTCGTAGTCTCAATTTCTCATCATTTCCAAATGTCCGCCATTTAGCTTTAAGAAACAATTTTTTTTATGGAGTTGTTCCACACAATATTGACAAGTTAGTCAACCTCGAGAAACTAGTTCTTTATAATAATAGTTTTTTTGGCTCCATTCCTCGGGAAATTTTCAAGTTGATCAAACTTGAGATTCTAAATCTTGGTGATAATTATATTTCGGGCTCCATTTGTGGTGAAATTGAAAAGTTGGTCAAACTCAAGAGACTAATTCTTTATAATAATAGTATTCCTGGCTCCATTCCTCGAGAAATTGGATTTTTAAACCAACTCATTGAACTTGATTTGTCTCGCAACCTTCTCTCTGGCCCAATCCCTTCAACCATTGGAAACTTGAACAATTTGAAATATCTTTATCTTTATAAAAACAATCTCACTGGTATGATTCCAATTGAAGTCACAAAACTCAATTCTCTTTTAATAATCCAATTGTCGACAAATAACCTCTTCGGACCAATACCATCATCTATAGGTAACTTGATTCATTTGAATTTTCTTTTGCTTGCTAAAAATAACATTTTAGGACCAATCCCTTCATCCATGGGTAATTTGGTTAATTTGAGTTATATTGACATTTCTAAAAATAACCTTTCTGGACCAATCCCCCCATCGATTGGTAATTTGGTTAATTTGAGTTTTATTGACCTTTCCAAAAATAACCTTTCTGGACCAATTCCACCATCTATGGGTAATTTGATCAATTTGAATCAGATTTACCTTTTCGAAAATAACCTTTCCGGATCAATCCCTTCATCCATCGGTAATTTGATCAATTTGAATGATATTTACCTTAGAAACAATAATCTTTCTGGACCAATTCCTCTGACTATCGGAAATTTGACAAAACTCAGTAGTTTATCACTTTCCTCAAATGTACTAAGTGGCAATATTCCCACTGAAATGAATAGGCTTACCAATATTATACTTTTAAGTCTAGGTTATAATAACTTCGTAGGTCAATTACCTCACAACATTTGTGTTGGTGGAAAGTTGAAAAGGTTCACAGCTGCCGAAAATCATTTTACAGGACTAGTTCCAAAGAGTTTGAAGAACTGTTCCAACCTTTTTAGAGTTAGGCTCCAAAAAAATCAACTAACTGGTAATATAACAGATAGTTTTGGTGTGTATCCAAATTTAGACTACATAGAATTAAGTGATAATCATTTTTATGGCCATCTATCACCAAATTGGGGAAAGTGTCAGAATCTCACAAGCCTAAAAATATCCAATAATAAGTTAACAGGAAGCATTCCACCAGAATTGGGTAGAGCAACAAAATTACATTATCTTAACCTCTCTTCAAACCATCTTACAGGAAGAATTCCAAAGGAGCTAGGCAACTTACTTTCATTGGTCCAACTCTCAATAAGTAACAATCGTCTTTTAGGACAAGTTCCTGTACAAATTGCTTCATTGCAGAAATTGTATAACTTGGATCTTTCATCAAACAATTTAAGTGGTTCTATCCCAAAACAAGTTGGAAAGTTGTCAATGTTATTGCACTTGAAATTGGGCAAAAATAAATTTGAAGGAAACATTCCTAGTGAGATTGGAGAACTAAAATATATTGAAGATCTTGATCTTAGTGGAAATGTTTTGAATGGAACCATACCAACAATGCTGGGACAGTTAAATTCTTTAGAAACATTGAATCTGTCACATAATAACCTTTCTGGTGTCATTCCCTTTAGTTATGGTGATATGTTAGCCTTGACAATTGTTGATATATCATACAATCAATTGGAGGGTCCGATTCCAAGCATTTTAGCCTTCCAAAAAGCTCCAATTGAAGCATTAAGAAATAACAAAGGCTTGTGTGGTAATGTTTCTGGCCTAATGTCCTGCTCAACATCAACTGGAAAGTTTCATAGTTATAAGACCAAAAAAGTTTTAGTGTTAGTTTTATCCATCACTCTAGGCACTATGTTGTCAGCATTATTTGTTTATGGGATCAAAATATCCTGTCGTTGTTGTCGAGCTTCAAGAACAATCGAATGCAAACCTACTGAAGAGTCACATGATCAAAACCTATTTGCAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGAGTTTGACAACAAGCATCTCATTGGGGTTGGAGGACATGGAAGTGTTTACAGAGCAGAGTTGCTTACAGGACAAGTTGTAGCTGTGAAGAAACTTCACTCATTGCAAAATGGAGAAATTTCAAATCTGAAAGCTTTTGCAAGTGAGATCAAAGCTCTAACAGAAATCCGACATCGAAACATTGTCAAGTTGTATGGGTATTGTTCACATCCATTGCATTCGTTTTTGGTTTATGAGTTCTTGGAGAATGGCAGTGTGGACAAGATCTTGAAAGACGATGAGCAAGCAACTAGATTTGATTGGAATAGAAGGGTTTATGAGTTCTTGGAGAATGGCAGTGTGGACAAGATCTTGAAAGACGATGAGCAAGCAACTAGATTTGATTGGAATAGAAGGGTGAATGTCATTAAGGATGTTGCAAATGCTTTATGCTATATGCATTATGATTGTTCACCTCCTATTGTTCATCGCGATATCTCGAGCAAGAATGTCATTTTGGATTTGGAATATGTAGCTCATGTATCAGACTTCGGAACAGCCAAGTTTCTAAATCCGGATTCGTCCAACTGGACCTCTTTTGTTGGAACATTTGGATACGCTGCTCCAGAACTTGCATACACAATGGAAGTAAGTGAGAAGTGTGATGTGTACAGTTTTGGAGTATTAATCTTGGAAATAGTTTTTGGAAAGCACCCGGGAGATTTTGTATCAACAATGGGGCAATCAAGTGATTTAGGTGTTGAAACTGAGGATCTGTCGTTGATTGATAAGGTGGATAAACGTCTCCCTCATCCTAGGAATGATACTGGGAAAGATTTGGTATCAATTATAAGGATTGCATGTCTTTGCTTGACTGAGAGCCCGCGCTATCGCCCTACAATGGAACATGTTTGTAAGGAGATTGTAATGTCAAAGTCATCTTCAATGGGTTAA 3324 0.3598 MSCLLLFSYVFVVMVTLPHAAAQNDDSQVDALLKWKASLDNQSKALLSSWIGNNPCGWEGIRCDNNSKFIYKINLNNMGLRGTLRSLNFSSFPNVRHLALRNNFFYGVVPHNIDKLVNLEKLVLYNNSFFGSIPREIFKLIKLEILNLGDNYISGSICGEIEKLVKLKRLILYNNSIPGSIPREIGFLNQLIELDLSRNLLSGPIPSTIGNLNNLKYLYLYKNNLTGMIPIEVTKLNSLLIIQLSTNNLFGPIPSSIGNLIHLNFLLLAKNNILGPIPSSMGNLVNLSYIDISKNNLSGPIPPSIGNLVNLSFIDLSKNNLSGPIPPSMGNLINLNQIYLFENNLSGSIPSSIGNLINLNDIYLRNNNLSGPIPLTIGNLTKLSSLSLSSNVLSGNIPTEMNRLTNIILLSLGYNNFVGQLPHNICVGGKLKRFTAAENHFTGLVPKSLKNCSNLFRVRLQKNQLTGNITDSFGVYPNLDYIELSDNHFYGHLSPNWGKCQNLTSLKISNNKLTGSIPPELGRATKLHYLNLSSNHLTGRIPKELGNLLSLVQLSISNNRLLGQVPVQIASLQKLYNLDLSSNNLSGSIPKQVGKLSMLLHLKLGKNKFEGNIPSEIGELKYIEDLDLSGNVLNGTIPTMLGQLNSLETLNLSHNNLSGVIPFSYGDMLALTIVDISYNQLEGPIPSILAFQKAPIEALRNNKGLCGNVSGLMSCSTSTGKFHSYKTKKVLVLVLSITLGTMLSALFVYGIKISCRCCRASRTIECKPTEESHDQNLFAIWSFDGKMVYENIIEATEEFDNKHLIGVGGHGSVYRAELLTGQVVAVKKLHSLQNGEISNLKAFASEIKALTEIRHRNIVKLYGYCSHPLHSFLVYEFLENGSVDKILKDDEQATRFDWNRRVYEFLENGSVDKILKDDEQATRFDWNRRVNVIKDVANALCYMHYDCSPPIVHRDISSKNVILDLEYVAHVSDFGTAKFLNPDSSNWTSFVGTFGYAAPELAYTMEVSEKCDVYSFGVLILEIVFGKHPGDFVSTMGQSSDLGVETEDLSLIDKVDKRLPHPRNDTGKDLVSIIRIACLCLTESPRYRPTMEHVCKEIVMSKSSSMG* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2332 1107 SUPERFAMILY RNI-like 362 688 - -
Psa6g2332 1107 SMART LRR_typ_2 116 140 IPR003591 -
Psa6g2332 1107 SMART LRR_typ_2 572 596 IPR003591 -
Psa6g2332 1107 SMART LRR_typ_2 380 404 IPR003591 -
Psa6g2332 1107 SMART LRR_typ_2 164 188 IPR003591 -
Psa6g2332 1107 SMART LRR_typ_2 212 236 IPR003591 -
Psa6g2332 1107 SMART LRR_typ_2 500 524 IPR003591 -
Psa6g2332 1107 SMART LRR_typ_2 525 548 IPR003591 -
Psa6g2332 1107 SMART LRR_typ_2 308 332 IPR003591 -
Psa6g2332 1107 SMART LRR_typ_2 644 667 IPR003591 -
Psa6g2332 1107 ProSiteProfiles Leucine-rich repeat profile. 646 667 IPR001611 GO:0005515
Psa6g2332 1107 ProSiteProfiles Protein kinase domain profile. 799 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2332 1107 Gene3D Ribonuclease Inhibitor 91 327 IPR032675 -
Psa6g2332 1107 Pfam Protein kinase domain 800 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2332 1107 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 265 902 - -
Psa6g2332 1107 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 902 1104 - -
Psa6g2332 1107 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 105 257 - -
Psa6g2332 1107 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 242 321 - -
Psa6g2332 1107 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 120 - -
Psa6g2332 1107 Gene3D Ribonuclease Inhibitor 328 491 IPR032675 -
Psa6g2332 1107 Gene3D Transferase(Phosphotransferase) domain 1 906 1106 - -
Psa6g2332 1107 SUPERFAMILY Protein kinase-like (PK-like) 790 1099 IPR011009 -
Psa6g2332 1107 Gene3D Phosphorylase Kinase; domain 1 761 877 - -
Psa6g2332 1107 PRINTS Leucine-rich repeat signature 575 588 - -
Psa6g2332 1107 PRINTS Leucine-rich repeat signature 644 657 - -
Psa6g2332 1107 ProSitePatterns Protein kinases ATP-binding region signature. 805 828 IPR017441 GO:0005524
Psa6g2332 1107 SUPERFAMILY RNI-like 72 394 - -
Psa6g2332 1107 Pfam Leucine rich repeat 502 561 IPR001611 GO:0005515
Psa6g2332 1107 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515
Psa6g2332 1107 ProSitePatterns Tyrosine protein kinases specific active-site signature. 951 963 IPR008266 GO:0004672|GO:0006468
Psa6g2332 1107 Gene3D Ribonuclease Inhibitor 18 90 IPR032675 -
Psa6g2332 1107 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Psa6g2332 1107 Gene3D Ribonuclease Inhibitor 492 590 IPR032675 -
Psa6g2332 1107 Gene3D Ribonuclease Inhibitor 591 715 IPR032675 -
Psa6g2332 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 242 321 - -
Psa6g2332 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 265 902 - -
Psa6g2332 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 105 257 - -
Psa6g2332 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 902 1104 - -
Psa6g2332 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2332 Psa-Chr6 168166848 168170251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2332 28 999 Receptor kinase-like Gene Family AT4G08850 42.625 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa6g2332 Pkinase 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2332 - - mtr:MTR_1g040615 1306.2