Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2331 ATGAAGCTTTTATCAATGTCATGTCTTCTTTTGTGCCTTTGGTTGTTTGTAGTAATGGCCACATCACCTCATCCGTACCATATTCAAGGCAGCGAGGCAGATGCTCTCTTGAAGTGGAAAGCAAGCCTTGACAACAATAGCCAGCCTTTGCTTTCATCATGGATTGGTGATAACCCTTGTGATTGGGAGGGAGTTGAATGCGACCATGAGTCAAAATTCATCAATAAGGTAAATCTCACCGATATTGGACTAAAAGGTACGCTTCAGAGTCTCAATTTCTCGTCACTTTCAAAACTAAATACTTTAGTTTTGAAAAACAACCTGTTGTATGGTGTTGTTCCACATCATATTGGAGTAATGTCCAATCTAGACACTCTTGATTTTTCACAAAACAATTTCTATGGTAGTATTCCAATAAGCATTGGTAATCTCTCCCAACTCTCCTTCCTTGATTTCAGTTTCAATAATCTCTCTGGGACTATTCCAACTGAGATAACCCAATTGGTGGGTCTTTATACACTGTCAATGAGCAACAATTCTTTTCTAAGTGGTTATATTCCTCAAGAAATCGGTAGATTGAGGAATTTGACACTGTTTGATATTTCTTTGTGCAATCTAGTTGGGACTATACCAATCTCGATAGAAAAGATAACCAACATGTCACATCTTGACATAGCACGAAACAGCCTTTCTGGAAACATTCCTCGTGGGATTTGGAAAATGAACTTAAAGCATTTGTCACTTAAATTCAATAACTTCAATGGTTCCATCTCACAAAATATTTTCAAATCACGAAACCTAGAGTTTCTTCATCTTCAAGAAAGTGGCCTTTATGGTTTCATGCCTAAGGAGTTTGGGATGTTGGGTAACTTGATAGATCTTGATATTAGTAACTGCAATCTTACTGGGTCTATTTCTATCTCTATAGGAAAATTGACCAATATATCATATCTCTTGTTCCATGACAACCAACTTTTTGGCCAAATTCCTCATGAAATTGGAAATTTGGTCAAACTCAAGAGTCTACATATTGAAGCTAATAGTCTTTCTGGGTCTATTCCTCAAGAAATAGGATTTTTAAAACAGCTTCATCTTCTTGATTTGTCTATGAATCATCTCTCTGGGACAATCCCTTCATCAATTGGAAACTTGAGCAATTTAAAATTTCTTTACCTTTATGCAAACCAAATCAATGGAAGCATTCCTAGTGAAATTGGAAACCTCAATTCCCTCACCACAATTCAGTGTGGTATGAACAACCTCTCTGGACCAATCCCATCTTCCATTGGTAAATTGGTCAATTTAGATTTTATTGGACTTCCACAAAATAAACTCTCTGGACCAATTCCTTCCACCATCGGAAATTTAACAAAACTCACTCATTTTATTCTTTTTTCCAATTCTATCTCCGGAGTTATTCCATTGGAAATGAACAGGGTTACTGATTTGGTCATGTTTGTGATAGCTTATAATAATTTCATAGGTCATTTACCTCACAACATTTGTGTTGGTGGAGAGTTGAGACATTTTGCTGTTTGTAATAACCAGTTTACAGGTCCAATTCCCAATAGTTTAAAGAATTGTTCCAGCCTTTATAGAGTTAGGCTTGAGCAAAACAGTTTAACTGACAATATAACAAATGGGTTTGGTGTGTATCCAAGTTTGGATTACATTGAGTTGAGTGATAATAATTTTTATGGCCACCTATCACCAAATTGGGGAAAGTGCAAGAATCTCACAAGTCTTAAAATCTCTAATAACAATTTAACAGGAAGCATACCACCAGAATTGGCCGAGGCAACTAATTTACAAGAACTTAACTTGTCTTCAAACCATCTTACCGGAAAAATTCCAAAGGAGTTAGAAAACCTATCTTTGTTGATCCAACTTTCGATAAGTAACAATCATCTTTCGGGAGAAGTTCCTGCACAAATAGCATCACTGCTTCAACTAAATACTTTGGAACTTGCAGTAAATAACTTAAGTGGCTCCATACCAGAAAAGTTTGGAAGGTTGCCTAGCTTATTGGAGTTGAATTTGAGCCAAAATAAGTTTGAAGGAAACATTCCTGCTGAGTTTGGCCAGTTGAAAGTTATTGAAAGTCTTGATCTTAGCGGGAATTTTTTAAATGGAACAATACCAGCAATGCTTGGACAGTTAAGTCATTTAGAAACATTGAATCTGTCACATAATAACCTTTCTGGTGTCATTCCTTTTAGTTCTGGTGATATGTTAGCCTTGACAATTGTTGATGTATCATACAACCAATTGGAAGGTCCGATTCCAAGCATTCCAGCCTTCCAAAATGCTTCGATTGAATCTCTGCGAAATAACAAAGGCTTTTGTGGTAATATCTCTGGTCTAAAACCTTGCTCGAGAGAAGATGGTAACTTTCATAGACATAAGAAAAACAAAATTTTGGTGCTAGTCTTAATCCTAACTCTAGGCACTCTATTGTTAGCATTATTTGTTTATGGACTCTCATATCATCTGTGTCGAATTTCAAGAACAAAAGAACTCAATGCTCATGAAGAATCAGTCGCTGAAAATCTATTCACAATATGGAGTTTTGATGGGAAAATGGTGTATGAGAATATTATCGAAGCCACAGAAAACTTTGACAACAAGCATCTCATTGGAGTTGGAGGACATGGAAATGTTTACAAAGCAGAGTTACCTACTGGTCAAGTTGTAGCTGTGAAAAAAATCCATTCATTACAAAATGAAGAAATGCCTGACCTAAAAGCTTTTGCGAGTGAGATCCGTGCTTTGACAGAAATTCGACATCGCAACATTGTCAAGTTATATGGGTTTTGTTCGCATTCACTACACTCATTTTTGGTTTATGAGTTCTTGGAGAAAGGTAGCGTGGACAACATTTTGAAGGACAATGAAAAAGCTGGTGAATTTGATTGGACTCTAAGAGTGAATGTCATTAGAGATGTTGCAAATGCTTTATGCTATATGCATTATGATTGTTCACCTCCTATTGTTCATCGCGATATCTCCAACAAGAATGTTATTTTGGATTTGGAATATGTAGCTCATGTATCAGACTTCGGAACTGCCAAGTTTCTAAATCCGGATTCATCCAACTGGACCTCTTTTGCCGGCACCTTTGGATATGCAGCTCCAGAACTTGCATACACAATGGAAGTAAATGAAAAATGTGATGTGTATAGTTTTGGAATATTAACTTTGGAAATACTTTTTGGAAAGCACCCTGGAGATACTGTAACATGTTTGTGGCAACAACCTTCAGATAGTGTTATGGACCTGACACTTGATACTCTGCCATGGATGGAGAAGTTGGACCTGCGTCTTCCGTATCCAAGAAATAGTGTTCAAGAGGAAGTGATTTTGATGATAAAGATAGCAATAGCTTGCTTGACAGAAAGCCCAAGATCTCGCCCTACCATGGAGCAGGTCTGCAAGAAGCTTATAATGTCATAA 3453 0.3695 MKLLSMSCLLLCLWLFVVMATSPHPYHIQGSEADALLKWKASLDNNSQPLLSSWIGDNPCDWEGVECDHESKFINKVNLTDIGLKGTLQSLNFSSLSKLNTLVLKNNLLYGVVPHHIGVMSNLDTLDFSQNNFYGSIPISIGNLSQLSFLDFSFNNLSGTIPTEITQLVGLYTLSMSNNSFLSGYIPQEIGRLRNLTLFDISLCNLVGTIPISIEKITNMSHLDIARNSLSGNIPRGIWKMNLKHLSLKFNNFNGSISQNIFKSRNLEFLHLQESGLYGFMPKEFGMLGNLIDLDISNCNLTGSISISIGKLTNISYLLFHDNQLFGQIPHEIGNLVKLKSLHIEANSLSGSIPQEIGFLKQLHLLDLSMNHLSGTIPSSIGNLSNLKFLYLYANQINGSIPSEIGNLNSLTTIQCGMNNLSGPIPSSIGKLVNLDFIGLPQNKLSGPIPSTIGNLTKLTHFILFSNSISGVIPLEMNRVTDLVMFVIAYNNFIGHLPHNICVGGELRHFAVCNNQFTGPIPNSLKNCSSLYRVRLEQNSLTDNITNGFGVYPSLDYIELSDNNFYGHLSPNWGKCKNLTSLKISNNNLTGSIPPELAEATNLQELNLSSNHLTGKIPKELENLSLLIQLSISNNHLSGEVPAQIASLLQLNTLELAVNNLSGSIPEKFGRLPSLLELNLSQNKFEGNIPAEFGQLKVIESLDLSGNFLNGTIPAMLGQLSHLETLNLSHNNLSGVIPFSSGDMLALTIVDVSYNQLEGPIPSIPAFQNASIESLRNNKGFCGNISGLKPCSREDGNFHRHKKNKILVLVLILTLGTLLLALFVYGLSYHLCRISRTKELNAHEESVAENLFTIWSFDGKMVYENIIEATENFDNKHLIGVGGHGNVYKAELPTGQVVAVKKIHSLQNEEMPDLKAFASEIRALTEIRHRNIVKLYGFCSHSLHSFLVYEFLEKGSVDNILKDNEKAGEFDWTLRVNVIRDVANALCYMHYDCSPPIVHRDISNKNVILDLEYVAHVSDFGTAKFLNPDSSNWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGILTLEILFGKHPGDTVTCLWQQPSDSVMDLTLDTLPWMEKLDLRLPYPRNSVQEEVILMIKIAIACLTESPRSRPTMEQVCKKLIMS* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2331 1150 SUPERFAMILY RNI-like 77 398 - -
Psa6g2331 1150 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Psa6g2331 1150 ProSitePatterns Tyrosine protein kinases specific active-site signature. 997 1009 IPR008266 GO:0004672|GO:0006468
Psa6g2331 1150 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 130 271 - -
Psa6g2331 1150 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 268 396 - -
Psa6g2331 1150 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 171 - -
Psa6g2331 1150 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 342 1150 - -
Psa6g2331 1150 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 200 347 - -
Psa6g2331 1150 Pfam Leucine rich repeat 650 707 IPR001611 GO:0005515
Psa6g2331 1150 Pfam Leucine rich repeat 578 637 IPR001611 GO:0005515
Psa6g2331 1150 ProSiteProfiles Leucine-rich repeat profile. 722 743 IPR001611 GO:0005515
Psa6g2331 1150 SMART LRR_sd22_2 384 410 - -
Psa6g2331 1150 SMART LRR_sd22_2 600 626 - -
Psa6g2331 1150 SMART LRR_sd22_2 432 458 - -
Psa6g2331 1150 SMART LRR_sd22_2 120 146 - -
Psa6g2331 1150 SMART LRR_sd22_2 720 741 - -
Psa6g2331 1150 SUPERFAMILY RNI-like 293 762 - -
Psa6g2331 1150 Gene3D Ribonuclease Inhibitor 274 372 IPR032675 -
Psa6g2331 1150 Gene3D Ribonuclease Inhibitor 185 273 IPR032675 -
Psa6g2331 1150 ProSiteProfiles Leucine-rich repeat profile. 602 625 IPR001611 GO:0005515
Psa6g2331 1150 ProSitePatterns Protein kinases ATP-binding region signature. 879 902 IPR017441 GO:0005524
Psa6g2331 1150 Pfam Protein kinase domain 874 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2331 1150 Gene3D Transferase(Phosphotransferase) domain 1 952 1150 - -
Psa6g2331 1150 PRINTS Leucine-rich repeat signature 363 376 - -
Psa6g2331 1150 PRINTS Leucine-rich repeat signature 720 733 - -
Psa6g2331 1150 Gene3D Phosphorylase Kinase; domain 1 834 951 - -
Psa6g2331 1150 Gene3D Ribonuclease Inhibitor 481 794 IPR032675 -
Psa6g2331 1150 SUPERFAMILY L domain-like 455 567 - -
Psa6g2331 1150 ProSiteProfiles Protein kinase domain profile. 873 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2331 1150 SMART LRR_typ_2 384 408 IPR003591 -
Psa6g2331 1150 SMART LRR_typ_2 360 383 IPR003591 -
Psa6g2331 1150 SMART LRR_typ_2 144 168 IPR003591 -
Psa6g2331 1150 SMART LRR_typ_2 601 624 IPR003591 -
Psa6g2331 1150 SMART LRR_typ_2 312 336 IPR003591 -
Psa6g2331 1150 SMART LRR_typ_2 672 696 IPR003591 -
Psa6g2331 1150 SMART LRR_typ_2 720 743 IPR003591 -
Psa6g2331 1150 Gene3D Ribonuclease Inhibitor 373 480 IPR032675 -
Psa6g2331 1150 SUPERFAMILY Protein kinase-like (PK-like) 859 1147 IPR011009 -
Psa6g2331 1150 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Psa6g2331 1150 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 268 396 - -
Psa6g2331 1150 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 342 1150 - -
Psa6g2331 1150 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 171 - -
Psa6g2331 1150 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 200 347 - -
Psa6g2331 1150 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 130 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2331 Psa-Chr6 168043800 168047369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2331 3 618 Receptor kinase-like Gene Family AT4G08850 33.643 6.86e-84 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa6g2331 Pkinase 6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2331 - - mtr:MTR_1g040615 1433.7