Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2328 ATGGATTTGGACCAGTGGATCTCGAAGGTTAAAGACGGCCAACACCTTCTCGAAGACGAACTTCAACTTCTCTGCGAATATGTTAAAGAGATTCTTATTGAGGAGTCCAATGTGCAACCTGTGAATAGTCCAGTAACTGTTTGTGGTGATATTCATGGTCAGTTTCATGATCTAATGAAACTTTTCCAGACCGGTGGTCATGTTCCCGAGACAAATTACATTTTTATGGGGGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTTTTGCTTCTAAAAGCTAGATACCCGGCTAATATTACCCTTCTACGTGGAAATCATGAAAGTAGACAACTCACCCAGGTCTATGGATTTTATGATGAATGCCAGAGAAAGTATGGAAATGCTAATGCTTGGCGATACTGTACCGATGTCTTCGACTATCTTACACTTTCTGCAATTATAGATGGAACTGTGCTTTGTGTTCACGGCGGCCTTTCTCCAGACATTCGAACAATTGACCAGATAAGAGTCATTGAGCGGAACTGTGAAATTCCTCATGAGGGGCCATTTTGTGATCTAATGTGGAGTGATCCTGAGGATATTGAAACATGGGCAGTCAGTCCGCGTGGAGCTGGTTGGCTTTTCGGATCTCGGGTTACATCTGAGTTCAATCACATAAACAACCTTGATCTTGTTTGTCGAGCACATCAACTTGTACAAGAAGGCCTTAAATACATGTTCCAAGATAAAGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGGTGGTAAATGTACATAATTCACTGTCAAGCCTAATGAAATTACTGTCTTGCAATGTGAATGCTTGA 894 0.4094 MDLDQWISKVKDGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMVVNVHNSLSSLMKLLSCNVNA* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2328 297 SUPERFAMILY Metallo-dependent phosphatases 2 281 IPR029052 -
Psa6g2328 297 Gene3D - 1 289 IPR029052 -
Psa6g2328 297 ProSitePatterns Serine/threonine specific protein phosphatases signature. 107 112 IPR006186 GO:0016787
Psa6g2328 297 SMART pp2a_7 16 287 IPR006186 GO:0016787
Psa6g2328 297 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 279 - -
Psa6g2328 297 CDD MPP_PP2A_PP4_PP6 2 276 - -
Psa6g2328 297 Pfam Calcineurin-like phosphoesterase 44 235 IPR004843 GO:0016787
Psa6g2328 297 PRINTS Serine/threonine phosphatase family signature 44 71 IPR006186 GO:0016787
Psa6g2328 297 PRINTS Serine/threonine phosphatase family signature 73 100 IPR006186 GO:0016787
Psa6g2328 297 PRINTS Serine/threonine phosphatase family signature 106 130 IPR006186 GO:0016787
Psa6g2328 297 PRINTS Serine/threonine phosphatase family signature 141 167 IPR006186 GO:0016787
Psa6g2328 297 PRINTS Serine/threonine phosphatase family signature 170 197 IPR006186 GO:0016787
Psa6g2328 297 PRINTS Serine/threonine phosphatase family signature 226 246 IPR006186 GO:0016787
Psa6g2328 297 PRINTS Serine/threonine phosphatase family signature 249 265 IPR006186 GO:0016787
Psa6g2328 297 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2328 Psa-Chr6 167896124 167903795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2328 43 221 Calmodulin-binding Proteins AT5G63870 37.500 1.58e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2328 K15498 - qlo:115968864 582.408