Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2324 ATGGATTCCAATACCCAACAGAACCAACCCAATTCTGGGTTGCTTCGTTTTCGTTCTGCACCAAGTTCACTCTTTTCAAATCTCACACCTTCTTTTGTTGATGATAACAAAGGCACTAAAGATTTTTGGGATGATTCTGAATCAGAGAGATTGGTTTCAAGGTTTGTGAGTAACGATAATATTAATATGTCTGGTTCTTCTTGTTCTAAGGAGATGAGTGGAATGAATTCTGGTTATGGCGGCGGCGGCGGCTGTGGTAGTGGGTTGCCACCTCACTATCCTAGACACGGTTCTGCTGCAGCTTCAAGTTCTGCTATGGATGGTTCTTTTGGATTGGTCGGTTCATTGGGGATGAATAATGAAACATCTCATAAGACCTTTGGTTCAAATCTTCTTAGGCAGGGTAGTTCCCCTGCTGGTCTTTTCTCCAACATTTCATTTCAAAATGGGTTTGCTGCCATGAAGGGTGTGGGAAACTATGCTGCGATGAATGGAAGTAATGGCGATGTAATTCCGTCTATTAACCGATTGAATAGTCAAGTTAGCTTCCCTTCAAGAAACACTTCTTCGTCGGGAATGTTATCACACTTCTCTGAGATAGATAGCGAGGATATTGAAGCAACTAGCCCTGACGATGGAGGCAGCAATGGTGATACACCTCATTATGGTTCTGGATTTCCCTATAGTTCTTGGAATGATACTCAATCATTCTCAGAAAATCTCATTGGCTTGAAACGAGAGCAAAGCGGCAACGAAAAAATGTTTTCTGATTTTCAGAATGGAGGACTAGGAAATCAAGTTCATATGTTATCACATCATTTGAGTTTATCGAAGACTTCATCTGAGATGATTACTATGGAGAAGTTGTTTCAGTTTCCAGATTCCGTTCCTTGTAAAATCAGAGCGAAACGAGGTTGCGCTACTCATCCTCGAAGCATTGCCGAAAGGGTAAGAAGAACTAGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTTCCAAACATGGACAAGCAAACTAACACATCAGACATGTTGGATTTGGCTGTTGATTACATTAAACAACTACAGAAACAATTCAAGTCTCTAAGTGACAAACGAGCAAACTGCAAATGTACGAGGATGCAGAAGGCAAATCAAATTCCTTGA 1149 0.4099 MDSNTQQNQPNSGLLRFRSAPSSLFSNLTPSFVDDNKGTKDFWDDSESERLVSRFVSNDNINMSGSSCSKEMSGMNSGYGGGGGCGSGLPPHYPRHGSAAASSSAMDGSFGLVGSLGMNNETSHKTFGSNLLRQGSSPAGLFSNISFQNGFAAMKGVGNYAAMNGSNGDVIPSINRLNSQVSFPSRNTSSSGMLSHFSEIDSEDIEATSPDDGGSNGDTPHYGSGFPYSSWNDTQSFSENLIGLKREQSGNEKMFSDFQNGGLGNQVHMLSHHLSLSKTSSEMITMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKQLQKQFKSLSDKRANCKCTRMQKANQIP* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2324 382 PANTHER TRANSCRIPTION FACTOR BHLH130 7 376 - -
Psa6g2324 382 Coils Coil 353 373 - -
Psa6g2324 382 CDD bHLH_AtbHLH_like 311 364 IPR045239 -
Psa6g2324 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 356 IPR011598 GO:0046983
Psa6g2324 382 Pfam Helix-loop-helix DNA-binding domain 311 357 IPR011598 GO:0046983
Psa6g2324 382 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 376 - -
Psa6g2324 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 371 IPR036638 GO:0046983
Psa6g2324 382 Gene3D - 307 380 IPR036638 GO:0046983
Psa6g2324 382 SMART finulus 312 362 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2324 Psa-Chr6 167111169 167114485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2324 1 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 49.344 2.79e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g2324 HLH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2324 - - gmx:100819605 489.574