Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2319 ATGTCTTCTTTTGTGCCTTTGGGTGTTTGTAGTAATGGCCACATCAACTGTTGCACCCCATATTCAAGGCAGCGAGGCAGATGCTCTATTGAAGTGGAAATTACAAGCCTTGATAACAATAGCCAGCCTTTGCTTTCATCATGGATTGGTGATAATCCTTGTGATTGGAAGAGAATTGAATGTGACTATGAGTCTAAATCCATCAACAAGGTAAACCTCACCGATATTGGACTTAAAGGTACGTTTCAGAGTCTCAATTTCTCGTCACTTCCAAAACTCCATACTTTAGTTTTAAGAAACAACTTATTCTATGGTGTTGTTCCACATCATATTGAAGCACTGTCCAATCTAAACACTCTTGATTTTTCACAGAACAACTTCTATGGTACTATTCCCGTAAGCATTGGGAATTTGTCCCAACTCTCCTATCTTGATCTTAGTGAGAATTATCTCACGGGGATTATTCCATCTGAGATAGGTAGACTGATAAATCTAAAAATACTTGATTTTCATAGCTGCAATCTCACCGGGTCTATACCAATATCAATAGGAATGTTGACCAATTTATCAACTCTCGTGTTAGATAACAACACACTTTTAGGCCACATTCCTAGTGAAATTGGAAAGTTGATCAATGTCAAGGAGCTATATTTGGGAATGAATAGTCTTTATGGCTTCATTCCTCAAGAAATTGGATTTCTAAAACAAATCAGTGAACTAAGTTTGTCTGTGAACCATCTCTTTGGTACAATCCCTTCTACTATTGGAAACTTGAGCAATTTACAGCATCTTTATCTTTATAACAACCATCTCACCGGTAGGATTCCCACTGAAATCGGAAATCTATACTCCCTTTCCTATTTTCGGTTGTTAGATAACAACCTCTCCGGATCAATCCCTTCATCCATTGGTGGCAATATTCCAATAGAAATGAATAGGCTTACCAATTTTGAACTTTTAAGTCTAGATTATAATAACTTCATAGGTCAACTACCTCACAACATTTGTGTTGGAGGCAAGTTGAAAAGGGTCACAGCTGCCGAAAATCATTTTACAGGATTAGTTCCAACAAGTTTGAAGAACTGTTCCAACCTTTTTAGAGTTAGGCTCCAAAAAAATCAACTAACTGGAAGAATTCCAAAGGAGCTAGGCAACTTAATTTCATTGATGCAACTCTCAATAAGTAGAAATCATCTTTTAGGAAAAATTCCGGTACAAATTGCATCATTGAAGAAGCTGAATAACTTGGAGCTTTCATCAAATAATTTAAGTGGCTCCATTCCAAAACAACTTGGAAGGTTGTCAATGTTATTGCACTTGAAATTGAGCAAAAATAAGTTTGAAGGAAACATTCCTAGTGAGATTGGAGAACTAAAATATATTGAAGATCTTGATCTTAGTGGAAATGTTTTGAATGGAACCATACCAGCAATGCTTGGACAGTTAAATTGTTTAGAAACATTGAATCTGTCACATAATAACCTTTCTGGTGTCATTCCCTTTAGTTATGGTGATATGTTAGCCTTGACAAATGTTGATATATCTTACAATCAATTGGAGGGTCCGATTCCAAGCATTCTAGCCTTCCAAAATGCTTCAATTGGAAATAACAAAGGCTTGTTTGGTAATGTTTCTGGCCTAATGTCTTGCTCACCATCAACTGGAAAGTTTCATAGTTATAAGACCACAAAATTTTTGGTGTTAGTTTTATCCATCACTCTAGGCACTCTATTGTCAGCATTATTTGTTTATGGCATGAAAATATACTATTGTTGGCTTACTTCAGTCACAATAGAATGCAAACCGACAGAAGAGTCACATGATCGAAACATATTTGCAATATGGAGTTTCGATGGAAAAATGGTGTATGAGAATATTATCGAAGCCACAGAAGAGTTTGACAACAAGCATCTCATTGGAGTTGGAGGACATGGAAGTGTTTACAGAGCAGAGTTGCCTACCGGACAAGTTGTAGCTGTGAAGAAACTTCATTCATTACAAAATGGAGATATGTCAAATCTAAAAGCTTTTGAAAGTGAGATCAAAGCTTTAACAGAAATCCGACATCGAAACATTGTGAAGTTATATGGGTATTGTTCACATCCATTGCATTCGTTTTTGGTTTATGAGCTCTTGGAGAATGGCAGTATGGACAAGATCTTGAAAGACGATGAGCAAGCAACTAGATTTGATTGGAATAGAAGGGTGAATGTCATTAAGGATGTTGCAAATGCTTTATGCTATATGCATCATGATTGTTCACCTCCTATTGTTCATCGCGATATCTCGAGCAAGAATGTCATTTTGGATTTGGAATATCTAGCTCATGTATCAGACTTCGGAACAGCTAAGTTTCTAAGTCCGGATTCATCAAACTGGACCTCTTTTGTTGGAACATTTGGATACGCTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAAAAATGTGATGTGTACGGTTTTGGAGTATTAATTTTGGAAATAGTTTTCGGAAAGCACCCTGGAGATTTTGTATCAACAATGGTGCAATCAAGTGATTTAAGTGTTGAAATTGATGATTTGTCGTTGATTGATAAGTTGGATAAACGTCTCCCTCATCCTAGGAATGATATTGGGAAAGATTTGGTATCAATTATAAGGATTGCATGTCATTGCTTGACTGAGAGTCCGCGTTATCGCCCTACAATGGAACATGTTTGCAAGGAGATTGTAATGTCAAAGTAA 2727 0.3667 MSSFVPLGVCSNGHINCCTPYSRQRGRCSIEVEITSLDNNSQPLLSSWIGDNPCDWKRIECDYESKSINKVNLTDIGLKGTFQSLNFSSLPKLHTLVLRNNLFYGVVPHHIEALSNLNTLDFSQNNFYGTIPVSIGNLSQLSYLDLSENYLTGIIPSEIGRLINLKILDFHSCNLTGSIPISIGMLTNLSTLVLDNNTLLGHIPSEIGKLINVKELYLGMNSLYGFIPQEIGFLKQISELSLSVNHLFGTIPSTIGNLSNLQHLYLYNNHLTGRIPTEIGNLYSLSYFRLLDNNLSGSIPSSIGGNIPIEMNRLTNFELLSLDYNNFIGQLPHNICVGGKLKRVTAAENHFTGLVPTSLKNCSNLFRVRLQKNQLTGRIPKELGNLISLMQLSISRNHLLGKIPVQIASLKKLNNLELSSNNLSGSIPKQLGRLSMLLHLKLSKNKFEGNIPSEIGELKYIEDLDLSGNVLNGTIPAMLGQLNCLETLNLSHNNLSGVIPFSYGDMLALTNVDISYNQLEGPIPSILAFQNASIGNNKGLFGNVSGLMSCSPSTGKFHSYKTTKFLVLVLSITLGTLLSALFVYGMKIYYCWLTSVTIECKPTEESHDRNIFAIWSFDGKMVYENIIEATEEFDNKHLIGVGGHGSVYRAELPTGQVVAVKKLHSLQNGDMSNLKAFESEIKALTEIRHRNIVKLYGYCSHPLHSFLVYELLENGSMDKILKDDEQATRFDWNRRVNVIKDVANALCYMHHDCSPPIVHRDISSKNVILDLEYLAHVSDFGTAKFLSPDSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYGFGVLILEIVFGKHPGDFVSTMVQSSDLSVEIDDLSLIDKLDKRLPHPRNDIGKDLVSIIRIACHCLTESPRYRPTMEHVCKEIVMSK* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2319 908 Pfam Protein kinase domain 634 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2319 908 Gene3D Ribonuclease Inhibitor 32 173 IPR032675 -
Psa6g2319 908 SUPERFAMILY Protein kinase-like (PK-like) 615 903 IPR011009 -
Psa6g2319 908 Gene3D Transferase(Phosphotransferase) domain 1 712 908 - -
Psa6g2319 908 ProSitePatterns Protein kinases ATP-binding region signature. 639 662 IPR017441 GO:0005524
Psa6g2319 908 Gene3D Phosphorylase Kinase; domain 1 596 711 - -
Psa6g2319 908 ProSiteProfiles Protein kinase domain profile. 633 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2319 908 SUPERFAMILY RNI-like 249 524 - -
Psa6g2319 908 SUPERFAMILY L domain-like 52 303 - -
Psa6g2319 908 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 373 907 - -
Psa6g2319 908 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 166 379 - -
Psa6g2319 908 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 35 166 - -
Psa6g2319 908 ProSitePatterns Tyrosine protein kinases specific active-site signature. 757 769 IPR008266 GO:0004672|GO:0006468
Psa6g2319 908 SMART LRR_typ_2 258 282 IPR003591 -
Psa6g2319 908 SMART LRR_typ_2 138 162 IPR003591 -
Psa6g2319 908 SMART LRR_typ_2 90 114 IPR003591 -
Psa6g2319 908 SMART LRR_typ_2 314 338 IPR003591 -
Psa6g2319 908 SMART LRR_typ_2 410 434 IPR003591 -
Psa6g2319 908 SMART LRR_typ_2 186 210 IPR003591 -
Psa6g2319 908 SMART LRR_typ_2 482 505 IPR003591 -
Psa6g2319 908 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 35 166 - -
Psa6g2319 908 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 166 379 - -
Psa6g2319 908 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 373 907 - -
Psa6g2319 908 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515
Psa6g2319 908 Pfam Leucine rich repeat 91 151 IPR001611 GO:0005515
Psa6g2319 908 Gene3D Ribonuclease Inhibitor 174 303 IPR032675 -
Psa6g2319 908 Gene3D Ribonuclease Inhibitor 304 554 IPR032675 -
Psa6g2319 908 PRINTS Leucine-rich repeat signature 141 154 - -
Psa6g2319 908 PRINTS Leucine-rich repeat signature 482 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2319 Psa-Chr6 166767877 166770998 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2319 35 805 Receptor kinase-like Gene Family AT4G08850 40.067 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa6g2319 Pkinase 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2319 - - mtr:MTR_0365s0020 994.956